Analysis Performed on 2026-02-15
2026-02-15
TORMES version 1.3.0
Assembly statistics
| Field | Description |
|---|---|
| Sample | Name of the sample |
| Reads | Total number of reads after quality filtering |
| AvgReadLen | Average read length after quality filtering |
| Contigs | Number of contigs of the draft genome (>200bp) |
| GenomeLength | Length (bp) of the draft genome |
| LargestContig | Length (bp) of the largest contig in the genome |
| N50 | “Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly” (Miller et al., 2010) |
| GC | GC content (%) of the draft genome |
| Depth | Number of times each nucleotide position in the draft genome has a read that align to that position |
* When already assembled genomes are included for TORMES analysis, “NA” will appear for “Reads”, “AvgReadLen” and “Depth” fields.
Select the parameter
Number of contigs
## Warning: `arrange_()` was deprecated in dplyr 0.7.0.
## Please use `arrange()` instead.
## See vignette('programming') for more helpGenome length
Average genome length per sample = 3.0912941^{6} bpLargest contig length
Average largest contig length per sample = 2.7912088^{6} bpN50
Average N50 per sample = 2.7858673^{6} bpGC content
Average GC content per sample = 37.784%Number of reads
## Warning: Ignoring 83 observations## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.Average read length
## Warning: Ignoring 83 observations## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.Sequencing depth
## Warning: Ignoring 83 observations## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.Taxonomic identification
Taxonomic identification was performed by using Kraken2 (Wood
et al., 2019). Further details can be found in the Kraken2
webpage. Additionally, 16S rRNA genes were extracted from each
genome by using Barrnap and used for
taxonomic classification by using the RDP Classifier (Wang et al.,
2007) at a confidence level of 0.8. Further details can be found in
the RDPTools
webpage.
Taxonomic identification by using Kraken2
The number between brackets refers to the percentage of reads (when starting TORMES from raw reads) or contigs (when starting TORMES from already assembled genomes) from each sample covered by the clade rooted at this taxon.
| Sample | Family | Genus | Species |
|---|---|---|---|
| 72855 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (87.50%) |
| 72882 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus casseliflavus (50.00%) |
| 72927 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 73054 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus casseliflavus (50.00%) |
| 73201 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 73338 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 73611 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 74016 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 74089 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 75125 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 75176 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 75411 | Enterococcaceae (66.67%) | Enterococcus (66.67%) | Enterococcus faecalis (66.67%) |
| 75520 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 75582 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (66.67%) |
| 75715 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 75746 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 75840 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 76174 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 76302 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 76304 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 76646 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 76746 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 76793 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 76952 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 76967 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 76985 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 77019 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 77340 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 77364 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (66.67%) |
| 77448 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 77566 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 77655 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (95.83%) |
| 77771 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 77804 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (50.00%) |
| 78036 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 78039 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 78041 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 78203 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 78272 | Enterococcaceae (90.00%) | Enterococcus (90.00%) | Enterococcus faecalis (90.00%) |
| 78438 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 78506 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (50.00%) |
| 78507 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 78555 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 78894 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 79576 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 79578 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 79579 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 79707 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 79867 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 80213 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (66.67%) |
| 80275 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 80343 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 80344 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 80411 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 80564 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (75.00%) |
| 80725 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 80740 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 80797 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 80798 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 80829 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 80889 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 81048 | Enterococcaceae (92.39%) | Enterococcus (92.39%) | Enterococcus faecalis (91.30%) |
| 81314 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 81378 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 81440 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 81456 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 81863 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 81956 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 81958 | Enterococcaceae (96.43%) | Enterococcus (96.43%) | Enterococcus faecium (75.00%) |
| 81973 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (75.00%) |
| 82126 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 82128 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (100.00%) |
| 82591 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus sp. HSIEG1 (100.00%) |
| 82961 | Enterococcaceae (92.31%) | Enterococcus (92.31%) | Enterococcus faecium (92.31%) |
| 84170 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (80.00%) |
| 85134 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (75.00%) |
| 85160 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (80.00%) |
| 85712 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (50.00%) |
| 86253 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecium (100.00%) |
| 86535 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus faecalis (77.78%) |
| barcode17 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | Enterococcus sp. HSIEG1 (62.50%) |
| barcode18 | Enterococcaceae (72.73%) | Enterococcus (72.73%) | Enterococcus casseliflavus (27.27%) |
| barcode19 | Enterococcaceae (91.30%) | Enterococcus (91.30%) | Enterococcus avium (43.48%) |
Taxonomic identification by using RDP Classifier
| Field | Description |
|---|---|
| Sample | Name of the sample where the 16S rRNA gene was found. Note that the same sample might harbor more than one 16S rRNA gene copy. |
| Contig | Name of the contig where the 16S rRNA gene was found. |
| Position | Position within the contig where the 16S rRNA gene was found (begin-end). Note that the 16S rRNA genes identified for one sample might not harbor the same length (fragmented, etc.). |
| Strand | Strand of the 16S rRNA gene defined as forward (+) or reverse (-). |
| Order | Taxonomic order that the 16S rRNA gene was assigned over a confidence level of 0.8. |
| Family | Taxonomic family that the 16S rRNA gene was assigned over a confidence level of 0.8. |
| Genus | Taxonomic genus that the 16S rRNA gene was assigned over a confidence level of 0.8. |
| Sample | Contig | Position | Strand | Order | Family | Genus |
|---|---|---|---|---|---|---|
| 72855-16S_rRNA | contig_2 | 953317-954875 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72855-16S_rRNA | contig_4 | 106670-108228 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72855-16S_rRNA | contig_2 | 1347027-1348585 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72855-16S_rRNA | contig_2 | 674752-676310 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72882-16S_rRNA | contig_1 | 1227248-1228805 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72882-16S_rRNA | contig_1 | 363891-365448 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72882-16S_rRNA | contig_1 | 3169784-3171341 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72882-16S_rRNA | contig_1 | 2607490-2609047 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72882-16S_rRNA | contig_1 | 605135-606692 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72927-16S_rRNA | contig_1 | 2542479-2544037 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72927-16S_rRNA | contig_1 | 297013-298571 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72927-16S_rRNA | contig_1 | 2090363-2091921 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 72927-16S_rRNA | contig_1 | 2894896-2896454 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73054-16S_rRNA | contig_1 | 1478223-1479780 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73054-16S_rRNA | contig_1 | 614867-616424 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73054-16S_rRNA | contig_1 | 3424340-3425897 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73054-16S_rRNA | contig_1 | 2862047-2863604 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73054-16S_rRNA | contig_1 | 856112-857669 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73201-16S_rRNA | contig_1 | 262033-263591 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73201-16S_rRNA | contig_1 | 888661-890219 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73201-16S_rRNA | contig_1 | 4126-5684 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73201-16S_rRNA | contig_1 | 2405086-2406644 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73338-16S_rRNA | contig_1 | 2275795-2277353 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73338-16S_rRNA | contig_1 | 3055324-3056882 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73338-16S_rRNA | contig_1 | 525914-527472 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73338-16S_rRNA | contig_1 | 132206-133764 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73611-16S_rRNA | contig_2 | 1383349-1384907 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73611-16S_rRNA | contig_2 | 946912-948470 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73611-16S_rRNA | contig_2 | 1053906-1055464 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73611-16S_rRNA | contig_2 | 713637-715195 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73611-16S_rRNA | contig_3 | 73992-75550 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 73611-16S_rRNA | contig_2 | 212837-214395 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74016-16S_rRNA | contig_2 | 1863380-1864938 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74016-16S_rRNA | contig_2 | 1155538-1157096 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74016-16S_rRNA | contig_2 | 1388813-1390371 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74016-16S_rRNA | contig_2 | 1497314-1498872 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74016-16S_rRNA | contig_2 | 126719-128277 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74016-16S_rRNA | contig_2 | 654753-656311 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74089-16S_rRNA | contig_1 | 1225801-1227359 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74089-16S_rRNA | contig_1 | 2676106-2677664 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74089-16S_rRNA | contig_1 | 870466-872024 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 74089-16S_rRNA | contig_1 | 584657-586215 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75125-16S_rRNA | contig_3 | 16411-17969 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75125-16S_rRNA | contig_3 | 2420583-2422141 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75125-16S_rRNA | contig_3 | 2527577-2529135 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75125-16S_rRNA | contig_3 | 2185786-2187344 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75125-16S_rRNA | contig_3 | 1154451-1156009 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75125-16S_rRNA | contig_3 | 1685441-1686999 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75176-16S_rRNA | contig_1 | 1955476-1957034 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75176-16S_rRNA | contig_1 | 1523606-1525164 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75176-16S_rRNA | contig_1 | 1630599-1632157 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75176-16S_rRNA | contig_1 | 1290331-1291889 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75176-16S_rRNA | contig_1 | 262698-264256 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75176-16S_rRNA | contig_1 | 789225-790783 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75411-16S_rRNA | contig_1 | 2737605-2739163 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75411-16S_rRNA | contig_1 | 2072295-2073853 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75411-16S_rRNA | contig_1 | 2451626-2453184 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75411-16S_rRNA | contig_1 | 568826-570384 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75520-16S_rRNA | contig_1 | 2343866-2345424 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75520-16S_rRNA | contig_1 | 275324-276882 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75520-16S_rRNA | contig_1 | 923289-924847 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75520-16S_rRNA | contig_1 | 531345-532903 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75582-16S_rRNA | contig_1 | 2749760-2751318 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75582-16S_rRNA | contig_1 | 1742163-1743721 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75582-16S_rRNA | contig_1 | 417-1975 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75582-16S_rRNA | contig_1 | 2465629-2467187 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75715-16S_rRNA | contig_1 | 2123110-2124668 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75715-16S_rRNA | contig_1 | 714797-716355 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75715-16S_rRNA | contig_1 | 1355942-1357500 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75715-16S_rRNA | contig_1 | 1070135-1071693 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75746-16S_rRNA | contig_9 | 1141255-1142813 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75746-16S_rRNA | contig_9 | 1468981-1470539 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75746-16S_rRNA | contig_9 | 1575974-1577532 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75746-16S_rRNA | contig_9 | 146-1704 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75746-16S_rRNA | contig_9 | 1809249-1810807 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75746-16S_rRNA | contig_9 | 2309964-2311522 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75840-16S_rRNA | contig_1 | 484583-486141 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75840-16S_rRNA | contig_1 | 2634348-2635906 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75840-16S_rRNA | contig_1 | 2203035-2204593 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 75840-16S_rRNA | contig_1 | 2912912-2914470 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76174-16S_rRNA | contig_7 | 602345-603903 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76174-16S_rRNA | contig_7 | 926143-927701 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76174-16S_rRNA | contig_7 | 1033137-1034695 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76174-16S_rRNA | contig_15 | 3567-5125 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76174-16S_rRNA | contig_7 | 306633-308191 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76174-16S_rRNA | contig_7 | 1299336-1300894 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76174-16S_rRNA | contig_7 | 1785231-1786789 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76302-16S_rRNA | contig_1 | 2764978-2766536 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76302-16S_rRNA | contig_1 | 2491141-2492699 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76302-16S_rRNA | contig_1 | 290744-292302 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76302-16S_rRNA | contig_1 | 1851332-1852890 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76304-16S_rRNA | contig_1 | 959539-961097 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76304-16S_rRNA | contig_1 | 2413990-2415548 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76304-16S_rRNA | contig_1 | 602678-604236 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76304-16S_rRNA | contig_1 | 316871-318429 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76646-16S_rRNA | contig_1 | 914066-915624 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76646-16S_rRNA | contig_1 | 1299823-1301381 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76646-16S_rRNA | contig_1 | 3454-5012 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76646-16S_rRNA | contig_1 | 644318-645876 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76746-16S_rRNA | contig_1 | 2603701-2605259 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76746-16S_rRNA | contig_1 | 710867-712425 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76746-16S_rRNA | contig_1 | 417-1975 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76746-16S_rRNA | contig_1 | 2214829-2216387 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76793-16S_rRNA | contig_1 | 578411-579969 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76793-16S_rRNA | contig_1 | 1198615-1200173 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76793-16S_rRNA | contig_1 | 313081-314639 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76793-16S_rRNA | contig_1 | 2623967-2625525 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76952-16S_rRNA | contig_1 | 271004-272562 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76952-16S_rRNA | contig_1 | 1030464-1032022 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76952-16S_rRNA | contig_1 | 4126-5684 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76952-16S_rRNA | contig_1 | 2550820-2552378 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76967-16S_rRNA | contig_3 | 1547090-1548648 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76967-16S_rRNA | contig_3 | 1871967-1873525 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76967-16S_rRNA | contig_3 | 1978961-1980519 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76967-16S_rRNA | contig_3 | 416620-418178 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76967-16S_rRNA | contig_3 | 2212235-2213793 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76967-16S_rRNA | contig_3 | 2711515-2713073 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76985-16S_rRNA | contig_1 | 541102-542660 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76985-16S_rRNA | contig_1 | 2747346-2748904 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76985-16S_rRNA | contig_1 | 2024685-2026243 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 76985-16S_rRNA | contig_1 | 2489068-2490626 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77019-16S_rRNA | contig_1 | 498628-500186 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77019-16S_rRNA | contig_1 | 2732216-2733774 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77019-16S_rRNA | contig_1 | 2065821-2067379 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77019-16S_rRNA | contig_1 | 2454186-2455744 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77340-16S_rRNA | contig_10 | 2039664-2041222 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77340-16S_rRNA | contig_10 | 2146658-2148216 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77340-16S_rRNA | contig_10 | 1806390-1807948 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77340-16S_rRNA | contig_10 | 774326-775884 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77340-16S_rRNA | contig_10 | 1303706-1305264 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77340-16S_rRNA | contig_10 | 2476111-2477669 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77364-16S_rRNA | contig_1 | 2681790-2683348 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77364-16S_rRNA | contig_1 | 1674426-1675984 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77364-16S_rRNA | contig_1 | 3102970-3104528 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77364-16S_rRNA | contig_1 | 2400556-2402114 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77448-16S_rRNA | contig_2 | 1528135-1529693 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77448-16S_rRNA | contig_6 | 3788-5346 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77448-16S_rRNA | contig_2 | 1091741-1093299 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77448-16S_rRNA | contig_2 | 1198735-1200293 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77448-16S_rRNA | contig_2 | 858467-860025 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77448-16S_rRNA | contig_2 | 2666432-2667990 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77448-16S_rRNA | contig_2 | 355782-357340 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77566-16S_rRNA | contig_2 | 4048-5606 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77566-16S_rRNA | contig_3 | 335245-336803 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77566-16S_rRNA | contig_3 | 48300-49858 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77566-16S_rRNA | contig_4 | 62098-63656 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77566-16S_rRNA | contig_4 | 1567331-1568889 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77655-16S_rRNA | contig_27 | 63918-65476 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77771-16S_rRNA | contig_3 | 101006-102564 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77771-16S_rRNA | contig_3 | 2356320-2357878 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77771-16S_rRNA | contig_3 | 2811944-2813502 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77771-16S_rRNA | contig_3 | 845183-846741 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77804-16S_rRNA | contig_1 | 2709678-2711236 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77804-16S_rRNA | contig_1 | 2418620-2420178 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77804-16S_rRNA | contig_1 | 2055319-2056877 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 77804-16S_rRNA | contig_1 | 516726-518284 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78036-16S_rRNA | contig_1 | 471816-473374 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78036-16S_rRNA | contig_1 | 1319914-1321472 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78036-16S_rRNA | contig_1 | 203003-204561 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78036-16S_rRNA | contig_1 | 2936705-2938263 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78039-16S_rRNA | contig_8 | 1887650-1889208 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78039-16S_rRNA | contig_8 | 2217671-2219229 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78039-16S_rRNA | contig_8 | 2324665-2326223 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78039-16S_rRNA | contig_8 | 747824-749382 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78039-16S_rRNA | contig_8 | 2557939-2559497 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78039-16S_rRNA | contig_8 | 218444-220002 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78041-16S_rRNA | contig_2 | 2683853-2685411 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78041-16S_rRNA | contig_2 | 2790846-2792404 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78041-16S_rRNA | contig_2 | 2450579-2452137 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78041-16S_rRNA | contig_2 | 1424844-1426402 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78041-16S_rRNA | contig_2 | 1951372-1952930 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78041-16S_rRNA | contig_2 | 299081-300640 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78203-16S_rRNA | contig_4 | 353852-355410 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78203-16S_rRNA | contig_4 | 681773-683331 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78203-16S_rRNA | contig_4 | 788767-790325 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78203-16S_rRNA | contig_4 | 2058517-2060075 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78203-16S_rRNA | contig_4 | 1022042-1023600 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78203-16S_rRNA | contig_4 | 1528057-1529615 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78272-16S_rRNA | contig_14 | 563368-564926 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78272-16S_rRNA | contig_14 | 2658851-2660409 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78272-16S_rRNA | contig_14 | 2029595-2031153 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78272-16S_rRNA | contig_14 | 2395800-2397358 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78438-16S_rRNA | contig_1 | 176435-177993 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78438-16S_rRNA | contig_1 | 551035-552593 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78438-16S_rRNA | contig_1 | 271385-272943 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78438-16S_rRNA | contig_1 | 391-1949 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78438-16S_rRNA | contig_1 | 1674016-1675574 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78438-16S_rRNA | contig_1 | 2207475-2209033 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78506-16S_rRNA | contig_2 | 493052-494610 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78506-16S_rRNA | contig_2 | 2655980-2657538 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78506-16S_rRNA | contig_2 | 915564-917122 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78506-16S_rRNA | contig_2 | 221228-222786 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78507-16S_rRNA | contig_1 | 650586-652144 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78507-16S_rRNA | contig_1 | 1262055-1263613 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78507-16S_rRNA | contig_1 | 3455-5013 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78507-16S_rRNA | contig_1 | 377811-379369 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78555-16S_rRNA | contig_3 | 1871776-1873334 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78555-16S_rRNA | contig_3 | 1436861-1438419 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78555-16S_rRNA | contig_3 | 1543855-1545413 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78555-16S_rRNA | contig_3 | 1203586-1205144 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78555-16S_rRNA | contig_3 | 167112-168670 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78555-16S_rRNA | contig_3 | 697571-699129 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78894-16S_rRNA | contig_2 | 2566739-2568297 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78894-16S_rRNA | contig_2 | 903935-905493 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78894-16S_rRNA | contig_2 | 61364-62922 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78894-16S_rRNA | contig_2 | 168357-169915 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78894-16S_rRNA | contig_2 | 1432241-1433799 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 78894-16S_rRNA | contig_2 | 401631-403189 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79576-16S_rRNA | contig_2 | 607114-608672 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79576-16S_rRNA | contig_2 | 3030351-3031909 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79576-16S_rRNA | contig_2 | 2381200-2382758 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79576-16S_rRNA | contig_2 | 2762103-2763661 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79578-16S_rRNA | contig_1 | 370864-372422 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79578-16S_rRNA | contig_1 | 2743671-2745229 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79578-16S_rRNA | contig_1 | 1844806-1846364 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79578-16S_rRNA | contig_1 | 2427465-2429023 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79579-16S_rRNA | contig_1 | 569200-570758 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79579-16S_rRNA | contig_1 | 2763745-2765303 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79579-16S_rRNA | contig_1 | 2334021-2335579 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79579-16S_rRNA | contig_1 | 3042309-3043867 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79707-16S_rRNA | contig_1 | 1803605-1805163 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79707-16S_rRNA | contig_1 | 704826-706384 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79707-16S_rRNA | contig_1 | 437548-439106 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79707-16S_rRNA | contig_1 | 974012-975570 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79867-16S_rRNA | contig_1 | 882758-884316 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79867-16S_rRNA | contig_1 | 1249571-1251129 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79867-16S_rRNA | contig_1 | 3454-5012 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 79867-16S_rRNA | contig_1 | 623136-624694 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80213-16S_rRNA | contig_1 | 502431-503989 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80213-16S_rRNA | contig_1 | 2664051-2665609 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80213-16S_rRNA | contig_1 | 923610-925168 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80213-16S_rRNA | contig_1 | 222559-224117 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80275-16S_rRNA | contig_3 | 2733403-2734961 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80275-16S_rRNA | contig_3 | 1585472-1587030 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80275-16S_rRNA | contig_3 | 2046772-2048330 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80275-16S_rRNA | contig_3 | 2467231-2468789 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80343-16S_rRNA | contig_1 | 1857954-1859512 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80343-16S_rRNA | contig_1 | 2238857-2240415 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80343-16S_rRNA | contig_1 | 736217-737775 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80343-16S_rRNA | contig_1 | 1589407-1590965 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80344-16S_rRNA | contig_1 | 2160720-2162278 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80344-16S_rRNA | contig_1 | 1091516-1093074 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80344-16S_rRNA | contig_1 | 652981-654539 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80344-16S_rRNA | contig_1 | 1372745-1374303 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80411-16S_rRNA | contig_3 | 1437321-1438879 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80411-16S_rRNA | contig_3 | 730744-732302 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80411-16S_rRNA | contig_3 | 1127025-1128583 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80411-16S_rRNA | contig_3 | 2147803-2149361 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80564-16S_rRNA | contig_2 | 502432-503990 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80564-16S_rRNA | contig_2 | 2664142-2665700 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80564-16S_rRNA | contig_2 | 923686-925244 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80564-16S_rRNA | contig_2 | 222560-224118 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80725-16S_rRNA | contig_7 | 966850-968408 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80725-16S_rRNA | contig_7 | 1337795-1339353 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80725-16S_rRNA | contig_7 | 1061800-1063358 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80725-16S_rRNA | contig_7 | 789284-790842 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80725-16S_rRNA | contig_7 | 2510507-2512065 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80725-16S_rRNA | contig_7 | 304183-305741 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80740-16S_rRNA | contig_1 | 3455-5013 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80740-16S_rRNA | contig_1 | 1213703-1215261 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80740-16S_rRNA | contig_1 | 625352-626910 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80740-16S_rRNA | contig_1 | 361524-363082 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80797-16S_rRNA | contig_1 | 2627403-2628961 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80797-16S_rRNA | contig_1 | 706467-708025 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80797-16S_rRNA | contig_1 | 416-1974 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80797-16S_rRNA | contig_1 | 2174760-2176318 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80798-16S_rRNA | contig_4 | 787957-789515 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80798-16S_rRNA | contig_4 | 2665903-2667461 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80798-16S_rRNA | contig_4 | 2560971-2562529 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80798-16S_rRNA | contig_4 | 2947132-2948690 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80829-16S_rRNA | contig_1 | 2627400-2628958 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80829-16S_rRNA | contig_1 | 706467-708025 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80829-16S_rRNA | contig_1 | 416-1974 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80829-16S_rRNA | contig_1 | 2174757-2176315 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80889-16S_rRNA | contig_1 | 553852-555410 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80889-16S_rRNA | contig_1 | 1278975-1280533 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80889-16S_rRNA | contig_1 | 275230-276788 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80889-16S_rRNA | contig_1 | 648806-650364 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80889-16S_rRNA | contig_1 | 3567-5125 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 80889-16S_rRNA | contig_1 | 814904-816463 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81048-16S_rRNA | contig_57 | 193201-194759 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81048-16S_rRNA | contig_56 | 42429-43998 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81048-16S_rRNA | contig_37 | 3364-4871 | (-) | Lactobacillales | Carnobacteriaceae | unclassified_Carnobacteriaceae |
| 81314-16S_rRNA | contig_1 | 273652-275210 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81314-16S_rRNA | contig_1 | 654555-656113 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81314-16S_rRNA | contig_1 | 4047-5605 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81314-16S_rRNA | contig_1 | 2307337-2308895 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81378-16S_rRNA | contig_1 | 1195636-1197194 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81378-16S_rRNA | contig_1 | 1572051-1573608 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81378-16S_rRNA | contig_1 | 1474158-1475716 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81378-16S_rRNA | contig_1 | 145-1703 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81378-16S_rRNA | contig_1 | 1812813-1814371 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81378-16S_rRNA | contig_1 | 2255423-2256981 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81440-16S_rRNA | contig_1 | 419-1977 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81440-16S_rRNA | contig_1 | 367200-368758 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81440-16S_rRNA | contig_1 | 1854321-1855879 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81440-16S_rRNA | contig_1 | 2473939-2475497 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81456-16S_rRNA | contig_1 | 2775317-2776875 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81456-16S_rRNA | contig_1 | 2042604-2044162 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81456-16S_rRNA | contig_1 | 2452217-2453775 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81456-16S_rRNA | contig_1 | 531529-533087 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81863-16S_rRNA | contig_1 | 718680-720238 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81863-16S_rRNA | contig_2 | 495064-496622 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81863-16S_rRNA | contig_1 | 294837-296395 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81863-16S_rRNA | contig_1 | 998312-999870 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81956-16S_rRNA | contig_1 | 619605-621163 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81956-16S_rRNA | contig_1 | 362903-364461 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81956-16S_rRNA | contig_1 | 2842359-2843917 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81956-16S_rRNA | contig_1 | 1379360-1380918 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81958-16S_rRNA | contig_7 | 1506984-1508542 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81958-16S_rRNA | contig_7 | 1189548-1191106 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81958-16S_rRNA | contig_7 | 1082554-1084112 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81958-16S_rRNA | contig_7 | 808572-810130 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81958-16S_rRNA | contig_7 | 1669779-1671337 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81958-16S_rRNA | contig_7 | 329145-330703 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81958-16S_rRNA | contig_16 | 56634-58192 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81958-16S_rRNA | contig_4 | 364031-365589 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81958-16S_rRNA | contig_6 | 45026-46584 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81973-16S_rRNA | contig_2 | 2070533-2072091 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81973-16S_rRNA | contig_2 | 2443337-2444895 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81973-16S_rRNA | contig_2 | 1037260-1038818 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 81973-16S_rRNA | contig_2 | 1774094-1775652 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82126-16S_rRNA | contig_5 | 483455-485013 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82126-16S_rRNA | contig_5 | 51152-52710 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82126-16S_rRNA | contig_5 | 158146-159704 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82126-16S_rRNA | contig_3 | 145-1703 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82126-16S_rRNA | contig_5 | 2674474-2676032 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82126-16S_rRNA | contig_5 | 1660150-1661708 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82126-16S_rRNA | contig_5 | 2190100-2191658 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82128-16S_rRNA | contig_2 | 307-1865 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82128-16S_rRNA | contig_2 | 815882-817440 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82128-16S_rRNA | contig_2 | 2470870-2472428 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82128-16S_rRNA | contig_2 | 2851773-2853331 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82591-16S_rRNA | contig_1 | 1106016-1107573 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82591-16S_rRNA | contig_1 | 1650475-1652032 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82591-16S_rRNA | contig_1 | 2398725-2400282 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82591-16S_rRNA | contig_1 | 2592920-2594477 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82591-16S_rRNA | contig_1 | 2079725-2081281 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82961-16S_rRNA | contig_4 | 1301072-1302630 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82961-16S_rRNA | contig_13 | 392-1950 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82961-16S_rRNA | contig_4 | 1618882-1620440 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82961-16S_rRNA | contig_4 | 1726943-1728501 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82961-16S_rRNA | contig_4 | 129249-130807 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82961-16S_rRNA | contig_4 | 1961283-1962841 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 82961-16S_rRNA | contig_4 | 2450801-2452359 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 84170-16S_rRNA | contig_1 | 516902-518460 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 84170-16S_rRNA | contig_1 | 2730911-2732469 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 84170-16S_rRNA | contig_1 | 1044513-1046071 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 84170-16S_rRNA | contig_1 | 830872-832430 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85134-16S_rRNA | contig_1 | 517077-518635 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85134-16S_rRNA | contig_1 | 2743963-2745521 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85134-16S_rRNA | contig_1 | 1043115-1044673 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85134-16S_rRNA | contig_1 | 829472-831030 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85160-16S_rRNA | contig_2 | 476070-477628 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85160-16S_rRNA | contig_2 | 1405739-1407297 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85160-16S_rRNA | contig_2 | 3106607-3108165 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85160-16S_rRNA | contig_2 | 163674-165232 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85712-16S_rRNA | contig_1 | 1527303-1528861 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85712-16S_rRNA | contig_1 | 758201-759759 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85712-16S_rRNA | contig_1 | 1252983-1254541 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 85712-16S_rRNA | contig_1 | 2137259-2138817 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86253-16S_rRNA | contig_1 | 859545-861103 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86253-16S_rRNA | contig_1 | 1503962-1505520 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86253-16S_rRNA | contig_1 | 444765-446323 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86253-16S_rRNA | contig_1 | 764595-766153 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86253-16S_rRNA | contig_1 | 1037111-1038669 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86253-16S_rRNA | contig_1 | 3568-5127 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86535-16S_rRNA | contig_3 | 568232-569790 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86535-16S_rRNA | contig_3 | 2767843-2769401 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86535-16S_rRNA | contig_3 | 2351336-2352894 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| 86535-16S_rRNA | contig_3 | 3047745-3049303 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| barcode17-16S_rRNA | contig_3 | 545732-547289 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| barcode17-16S_rRNA | contig_3 | 861245-862802 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| barcode17-16S_rRNA | contig_3 | 349996-351553 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| barcode17-16S_rRNA | contig_4 | 516710-518267 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| barcode17-16S_rRNA | contig_1 | 19058-20616 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| barcode18-16S_rRNA | contig_8 | 1028206-1029763 | (+) | Lactobacillales | Enterococcaceae | Enterococcus |
| barcode18-16S_rRNA | contig_8 | 510833-512390 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| barcode18-16S_rRNA | contig_8 | 2727484-2729041 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
| barcode18-16S_rRNA | contig_8 | 832467-834024 | (-) | Lactobacillales | Enterococcaceae | Enterococcus |
Multi-Locus Sequence Typing (MLST)
Further details can be found in mlst web page.
| Symbol | Meaning |
|---|---|
| ~ | novel full length allele similar to match |
| ? | partial match to known allele |
| - | allele missing |
| Scheme | ST | 1 | 2 | 3 | 4 | 5 | 6 | 7 | |
|---|---|---|---|---|---|---|---|---|---|
| 72855 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 72882 | - | - | |||||||
| 72927 | efaecalis | - | gdh(1) | gyd(7) | pstS(9) | gki(5) | aroE(1) | xpt(1) | yqiL(1) |
| 73054 | - | - | |||||||
| 73201 | efaecalis | - | gdh(17) | gyd(6) | pstS(32) | gki(5) | aroE(3) | xpt(1) | yqiL(20) |
| 73338 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 73611 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 74016 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 74089 | efaecalis | 19 | gdh(1) | gyd(2) | pstS(12) | gki(8) | aroE(1) | xpt(6) | yqiL(1) |
| 75125 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 75176 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 75411 | efaecalis | 179 | gdh(5) | gyd(1) | pstS(1) | gki(3) | aroE(7) | xpt(1) | yqiL(6) |
| 75520 | efaecalis | - | gdh(95) | gyd(6) | pstS(12) | gki(93) | aroE(40) | xpt(15) | yqiL(91) |
| 75582 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 75715 | efaecalis | 19 | gdh(1) | gyd(2) | pstS(12) | gki(8) | aroE(1) | xpt(6) | yqiL(1) |
| 75746 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 75840 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 76174 | efaecium | 1336 | atpA(9) | ddl(1) | gdh(1) | purK(1) | gyd(12) | pstS(1) | adk(28) |
| 76302 | efaecalis | 79 | gdh(23) | gyd(6) | pstS(7) | gki(25) | aroE(24) | xpt(2) | yqiL(17) |
| 76304 | efaecalis | 19 | gdh(1) | gyd(2) | pstS(12) | gki(8) | aroE(1) | xpt(6) | yqiL(1) |
| 76646 | efaecalis | 116 | gdh(17) | gyd(2) | pstS(22) | gki(1) | aroE(14) | xpt(14) | yqiL(1) |
| 76746 | efaecalis | 81 | gdh(27) | gyd(2) | pstS(16) | gki(28) | aroE(26) | xpt(2) | yqiL(1) |
| 76793 | efaecalis | - | gdh(~9) | gyd(6) | pstS(7) | gki(16) | aroE(11) | xpt(11) | yqiL(8) |
| 76952 | efaecalis | 30 | gdh(7) | gyd(1) | pstS(11) | gki(1) | aroE(10) | xpt(2) | yqiL(1) |
| 76967 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 76985 | efaecalis | 626 | gdh(7) | gyd(12) | pstS(11) | gki(1) | aroE(10) | xpt(2) | yqiL(1) |
| 77019 | efaecalis | 41 | gdh(1) | gyd(7) | pstS(11) | gki(21) | aroE(1) | xpt(4) | yqiL(1) |
| 77340 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 77364 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 77448 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 77566 | efaecalis | 21 | gdh(1) | gyd(7) | pstS(9) | gki(1) | aroE(1) | xpt(1) | yqiL(1) |
| 77655 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 77771 | efaecalis | 179 | gdh(5) | gyd(1) | pstS(1) | gki(3) | aroE(7) | xpt(1) | yqiL(6) |
| 77804 | efaecalis | 79 | gdh(23) | gyd(6) | pstS(7) | gki(25) | aroE(24) | xpt(2) | yqiL(17) |
| 78036 | efaecalis | 525 | gdh(12) | gyd(7) | pstS(3) | gki(32) | aroE(6) | xpt(26) | yqiL(5) |
| 78039 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 78041 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 78203 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 78272 | efaecalis | 528 | gdh(8) | gyd(2) | pstS(15) | gki(9) | aroE(4) | xpt(18) | yqiL(1) |
| 78438 | efaecium | 262 | atpA(7) | ddl(1) | gdh(1) | purK(1) | gyd(5) | pstS(7) | adk(1) |
| 78506 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 78507 | efaecalis | 202 | gdh(1) | gyd(7) | pstS(9) | gki(1) | aroE(1) | xpt(10) | yqiL(1) |
| 78555 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 78894 | efaecium | - | atpA(15) | ddl(1) | gdh(1) | purK(44) | gyd(1) | pstS(20) | adk(28) |
| 79576 | efaecalis | 525 | gdh(12) | gyd(7) | pstS(3) | gki(32) | aroE(6) | xpt(26) | yqiL(5) |
| 79578 | efaecalis | 249 | gdh(15) | gyd(1) | pstS(18) | gki(57) | aroE(3) | xpt(35) | yqiL(53) |
| 79579 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 79707 | efaecalis | - | gdh(90) | gyd(7) | pstS(23) | gki(32) | aroE(39) | xpt(20) | yqiL(9?) |
| 79867 | efaecalis | 387 | gdh(9) | gyd(6) | pstS(7) | gki(13) | aroE(13) | xpt(35) | yqiL(8) |
| 80213 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 80275 | efaecalis | 314 | gdh(9) | gyd(6) | pstS(4) | gki(49) | aroE(11) | xpt(15) | yqiL(61) |
| 80343 | efaecalis | 525 | gdh(12) | gyd(7) | pstS(3) | gki(32) | aroE(6) | xpt(26) | yqiL(5) |
| 80344 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 80411 | efaecalis | 308 | gdh(3) | gyd(7) | pstS(11) | gki(21) | aroE(9) | xpt(4) | yqiL(7) |
| 80564 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 80725 | efaecium | - | atpA(9) | ddl(3) | gdh(1) | purK(1) | gyd(12) | pstS(1) | adk(28) |
| 80740 | efaecalis | - | gdh(~72) | gyd(8) | pstS(11) | gki(33) | aroE(6) | xpt(2) | yqiL(14) |
| 80797 | efaecalis | 81 | gdh(27) | gyd(2) | pstS(16) | gki(28) | aroE(26) | xpt(2) | yqiL(1) |
| 80798 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 80829 | efaecalis | 81 | gdh(27) | gyd(2) | pstS(16) | gki(28) | aroE(26) | xpt(2) | yqiL(1) |
| 80889 | efaecium | 437 | atpA(9) | ddl(5) | gdh(1) | purK(3) | gyd(1) | pstS(20) | adk(1) |
| 81048 | efaecalis | - | gdh(5) | gyd(1) | pstS(1) | gki(48?) | aroE(7) | xpt(1) | yqiL(-) |
| 81314 | efaecalis | 525 | gdh(12) | gyd(7) | pstS(3) | gki(32) | aroE(6) | xpt(26) | yqiL(5) |
| 81378 | efaecium | 260 | atpA(7) | ddl(1) | gdh(1) | purK(1) | gyd(12) | pstS(7) | adk(1) |
| 81440 | efaecalis | 387 | gdh(9) | gyd(6) | pstS(7) | gki(13) | aroE(13) | xpt(35) | yqiL(8) |
| 81456 | efaecalis | 179 | gdh(5) | gyd(1) | pstS(1) | gki(3) | aroE(7) | xpt(1) | yqiL(6) |
| 81863 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 81956 | efaecalis | 16 | gdh(5) | gyd(1) | pstS(1) | gki(3) | aroE(7) | xpt(7) | yqiL(6) |
| 81958 | efaecium | - | atpA(9,52) | ddl(1) | gdh(1) | purK(1) | gyd(12) | pstS(11) | adk(18,28) |
| 81973 | efaecalis | 774 | gdh(4) | gyd(7) | pstS(3) | gki(3) | aroE(8) | xpt(1) | yqiL(3) |
| 82126 | efaecium | 1336 | atpA(9) | ddl(1) | gdh(1) | purK(1) | gyd(12) | pstS(1) | adk(28) |
| 82128 | efaecalis | 525 | gdh(12) | gyd(7) | pstS(3) | gki(32) | aroE(6) | xpt(26) | yqiL(5) |
| 82591 | - | - | |||||||
| 82961 | efaecium | 1336 | atpA(9) | ddl(1) | gdh(1) | purK(1) | gyd(12) | pstS(1) | adk(28) |
| 84170 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 85134 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 85160 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| 85712 | efaecalis | 628 | gdh(3) | gyd(1) | pstS(23) | gki(12) | aroE(9) | xpt(10) | yqiL(7) |
| 86253 | efaecium | 1282 | atpA(7) | ddl(1) | gdh(1) | purK(1) | gyd(5) | pstS(11) | adk(1) |
| 86535 | efaecalis | 6 | gdh(12) | gyd(7) | pstS(3) | gki(7) | aroE(6) | xpt(1) | yqiL(5) |
| barcode17 | - | - | |||||||
| barcode18 | - | - | |||||||
| barcode19 | - | - |
Pangenome analysis
Pangenome genes summary
| Genes | Description | Number |
|---|---|---|
| Core genes | (99% <= strains <= 100%) | 0 |
| Soft core genes | (95% <= strains < 99%) | 10 |
| Shell genes | (15% <= strains < 95%) | 6165 |
| Cloud genes | (0% <= strains < 15%) | 14836 |
| Total genes | (0% <= strains <= 100%) | 21011 |
Schematic representation of genes presence (color) or absence (blank) between ssamples:
Pangenome tree based on presence/absence of accesory genes representation
Rectangular (phylogram)
Circular (phylogram)
Rectangular (cladogram)
Circular (cladogram)
Pangenome tree based on core genes alignment representation
Rectangular (phylogram)
Circular (phylogram)
Rectangular (cladogram)
Circular (cladogram)
Antimicrobial resistance
The search of antimicrobial resistance genes was performed by screening the genome against Resfinder (E. Zankari et al., 2012), CARD (A.G. McArthur et al., 2013) and ARG-ANNOT (S.K. Gupta et al., 2014) databases by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing TORMES output directory.
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antimicrobial resistance gene |
| Gaps | Gaps in subject (genome) and query (antimicrobial resistance gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antimicrobial resistance gene |
| Product | Antimicrobial resistance gene product |
| Resistance | Antimicrobial that the gene confers resistance to |
Select the samples and the database
72855
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 355299 | 356738 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_5 | 17533 | 18441 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_5 | 19073 | 19867 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 27220 | 27867 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_3 | 11126 | 11863 | erm(B)_12 | 0/0 | 100 | 100 | U18931 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_5 | 13512 | 14274 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 1486285 | 1487781 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 6067 | 8673 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
| contig_3 | 17143 | 19749 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 355299 | 356738 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_5 | 17611 | 18441 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_5 | 19073 | 19867 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_4 | 621893 | 622387 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_2 | 1533873 | 1534367 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_4 | 854677 | 855171 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_2 | 1320253 | 1321980 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 1322539 | 1323592 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_4 | 136798 | 137952 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 27220 | 27867 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_3 | 11118 | 11863 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_5 | 13537 | 14282 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 1486285 | 1487781 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_5 | 18438 | 18980 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 6681 | 7712 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_3 | 18104 | 19135 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_1 | 7705 | 8673 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_3 | 17143 | 18111 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_1 | 10020 | 10715 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 15101 | 15796 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 8888 | 10042 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 15774 | 16928 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 6067 | 6675 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 19141 | 19749 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 4729 | 5639 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 20177 | 21087 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 4091 | 4576 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 21240 | 21725 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 355299 | 356738 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_5 | 17533 | 18441 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_5 | 19073 | 19867 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_5 | 18438 | 18980 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_1 | 6681 | 7712 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_3 | 18104 | 19135 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_1 | 7705 | 8673 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_3 | 17143 | 18111 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_1 | 10020 | 10715 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_3 | 15101 | 15796 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_1 | 8888 | 10042 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_3 | 15774 | 16928 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_1 | 6067 | 6675 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_3 | 19141 | 19749 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_1 | 4729 | 5639 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_3 | 20177 | 21087 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_1 | 4091 | 4576 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_3 | 21240 | 21725 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_3 | 11126 | 11863 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_5 | 13537 | 14274 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 1486285 | 1487781 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_4 | 991025 | 991858 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 27220 | 27867 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_4 | 621893 | 622387 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_2 | 1533873 | 1534367 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_4 | 854677 | 855171 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
72882
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 3310879 | 3312500 | VanC2XY_5 | 0/0 | 100 | 99 | EU151760 | VanC2XY | Vancomycin |
CARD
## [1] "No antimicrobial resitance genes from CARD database were found"ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 3310879 | 3311931 | (Gly)vanC2 | 0/0 | 100 | 99 | L29638:33-1085 | (Gly)vanC2 | NA |
| contig_1 | 3314698 | 3315393 | (Gly)vanRc3 | 0/0 | 100 | 99 | AY033764:3846-4541 | (Gly)vanRc3 | NA |
| contig_1 | 3315455 | 3316513 | (Gly)vanSc3 | 0/0 | 100 | 99 | AY033764:4604-5662 | (Gly)vanSc3 | NA |
| contig_1 | 3312497 | 3314599 | (Gly)vanTc3 | 0/0 | 100 | 98 | AY033764:1644-3746 | (Gly)vanTc3 | NA |
| contig_1 | 3311928 | 3312500 | (Gly)vanXYc2/3 | 0/0 | 100 | 99 | EU151760:1078-1650 | (Gly)vanXYc2/3 | NA |
72927
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2142567 | 2143475 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_1 | 2141203 | 2141997 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_1 | 837827 | 838324 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_1 | 1277529 | 1278026 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_1 | 2139716 | 2140478 | erm(B)_18 | 1/1 | 100 | 100 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 2433902 | 2435398 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 14532 | 15874 | tet(L)_2 | 0/0 | 98 | 100 | M29725 | tet(L) | Doxycycline, Tetracycline |
| contig_1 | 12124 | 14043 | tet(M)_2 | 0/0 | 100 | 98 | X90939 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 732684 | 734603 | tet(M)_4 | 0/0 | 100 | 100 | X75073 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2142567 | 2143397 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_1 | 2141203 | 2141997 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1613926 | 1614420 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 837827 | 838324 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_1 | 1277529 | 1278026 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_1 | 2568943 | 2570670 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2567330 | 2568377 | efrB | 7/7 | 96 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2060124 | 2061278 | emeA | 1/27 | 98 | 98 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 2139708 | 2140453 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 2433902 | 2435398 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 14532 | 15874 | tet(L) | 0/0 | 98 | 100 | M11036:0-1377 | TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. | tetracycline |
| contig_1 | 12124 | 14043 | tetM | 0/0 | 100 | 98 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 732684 | 734603 | tetM | 0/0 | 100 | 99 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2142567 | 2143475 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_1 | 2141203 | 2141997 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_1 | 2139716 | 2140453 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 2433902 | 2435398 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1310860 | 1311693 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 14532 | 15874 | (Tet)tetL | 0/0 | 98 | 100 | FN435329:1-1377 | (Tet)tetL | NA |
| contig_1 | 12124 | 14043 | (Tet)tetM | 0/0 | 100 | 98 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 732684 | 734603 | (Tet)tetM | 0/0 | 100 | 100 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1613926 | 1614420 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 837827 | 838324 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
| contig_1 | 1277529 | 1278026 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
73054
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 19430 | 21051 | VanC2XY_5 | 0/0 | 100 | 99 | EU151760 | VanC2XY | Vancomycin |
CARD
## [1] "No antimicrobial resitance genes from CARD database were found"ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 19430 | 20482 | (Gly)vanC2 | 0/0 | 100 | 99 | L29638:33-1085 | (Gly)vanC2 | NA |
| contig_1 | 23249 | 23944 | (Gly)vanRc3 | 0/0 | 100 | 99 | AY033764:3846-4541 | (Gly)vanRc3 | NA |
| contig_1 | 24006 | 25064 | (Gly)vanSc3 | 0/0 | 100 | 99 | AY033764:4604-5662 | (Gly)vanSc3 | NA |
| contig_1 | 21048 | 23150 | (Gly)vanTc3 | 0/0 | 100 | 98 | AY033764:1644-3746 | (Gly)vanTc3 | NA |
| contig_1 | 20479 | 21051 | (Gly)vanXYc2/3 | 0/0 | 100 | 99 | EU151760:1078-1650 | (Gly)vanXYc2/3 | NA |
73201
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2298878 | 2300374 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1358941 | 1359435 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2431693 | 2433420 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2430081 | 2431134 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 918007 | 919161 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 2298878 | 2300374 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2298878 | 2300374 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1778694 | 1779527 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1358941 | 1359435 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
73338
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2731743 | 2733182 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_2 | 21471 | 22379 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_2 | 23011 | 23805 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_4 | 10182 | 10829 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_2 | 17450 | 18212 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 6037 | 6794 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 665171 | 666667 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 1139137 | 1141056 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_3 | 70564 | 73170 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2731743 | 2733182 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_2 | 21549 | 22379 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_2 | 23011 | 23805 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1761657 | 1762151 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 712759 | 713253 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 1528873 | 1529367 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 499140 | 500867 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 501426 | 502479 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2246092 | 2247246 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_4 | 10182 | 10829 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_2 | 17475 | 18220 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 6029 | 6774 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 665171 | 666667 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 22376 | 22918 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 1139137 | 1141056 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_3 | 71525 | 72556 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_3 | 70564 | 71532 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_3 | 68522 | 69217 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 69195 | 70349 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 72562 | 73170 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 73598 | 74508 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 74661 | 75146 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2731743 | 2733182 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_2 | 21471 | 22379 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_2 | 23011 | 23805 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 22376 | 22918 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_3 | 71525 | 72556 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_3 | 70564 | 71532 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_3 | 68522 | 69217 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_3 | 69195 | 70349 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_3 | 72562 | 73170 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_3 | 73598 | 74508 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_3 | 74661 | 75146 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_2 | 17475 | 18212 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 6037 | 6774 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 665171 | 666667 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1392172 | 1393005 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_4 | 10182 | 10829 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 1139137 | 1141056 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1761657 | 1762151 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 712759 | 713253 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_1 | 1528873 | 1529367 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
73611
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1309630 | 1310178 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_2 | 628258 | 628755 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_2 | 861206 | 862684 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1309630 | 1310178 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_2 | 628258 | 628755 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_2 | 124790 | 126076 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_2 | 861206 | 862684 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1309630 | 1310178 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_2 | 861206 | 862684 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_2 | 628258 | 628755 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
74016
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1790922 | 1791470 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_4 | 14690 | 15598 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_4 | 16230 | 17024 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_2 | 1071681 | 1072178 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_4 | 10669 | 11431 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 1303107 | 1304585 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 26000 | 28606 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1790922 | 1791470 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_4 | 14768 | 15598 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_4 | 16230 | 17024 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_2 | 1071681 | 1072178 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_2 | 567772 | 569058 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_4 | 10694 | 11439 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 1303107 | 1304585 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_4 | 15595 | 16137 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_4 | 26961 | 27992 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_4 | 26000 | 26968 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_4 | 22451 | 23146 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 23124 | 24278 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 27998 | 28606 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 30372 | 30857 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1790922 | 1791470 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_4 | 14690 | 15598 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_4 | 16230 | 17024 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_4 | 15595 | 16137 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_4 | 26961 | 27992 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_4 | 26000 | 26968 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_4 | 22451 | 23146 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_4 | 23124 | 24278 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_4 | 27998 | 28606 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_4 | 30372 | 30857 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_4 | 10694 | 11431 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 1303107 | 1304585 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_2 | 1071681 | 1072178 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
74089
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 2897 | 3805 | ant(6)-Ia_1 | 0/0 | 100 | 99 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_3 | 1471 | 2265 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 67552 | 68199 | cat_5 | 0/0 | 100 | 99 | U35036 | cat | Chloramphenicol |
| contig_3 | 81010 | 81495 | dfrG_1 | 0/0 | 98 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_3 | 20218 | 20811 | erm(A)_3 | 0/0 | 100 | 100 | EU348758 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 1 | 746 | erm(B)_18 | 1/1 | 98 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 4110 | 4872 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 76303 | 77065 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 14674 | 16101 | fexA_1 | 0/0 | 100 | 100 | AJ549214 | fexA | Chloramphenicol, Florfenicol |
| contig_1 | 1332177 | 1333673 | lsa(A)_3 | 0/0 | 100 | 98 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_3 | 16789 | 18756 | optrA_4 | 0/0 | 100 | 100 | KT862777 | optrA | Linezolid, Chloramphenicol, Florfenicol |
| contig_3 | 36074 | 36922 | str_2 | 0/0 | 100 | 100 | FN435330 | str | Streptomycin |
| contig_3 | 65134 | 66510 | tet(L)_2 | 0/0 | 100 | 96 | M29725 | tet(L) | Doxycycline, Tetracycline |
| contig_3 | 63016 | 64935 | tet(M)_1 | 0/0 | 100 | 98 | X92947 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 461017 | 462936 | tet(M)_4 | 0/0 | 100 | 100 | X75073 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 2897 | 3727 | aad(6) | 0/0 | 100 | 99 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_3 | 1471 | 2265 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_3 | 67552 | 68199 | catA8 | 0/0 | 100 | 99 | JQ922409.1:92-740 | catA8 is a chloramphenicol acetyltransferase that confers resistance to chloramphenicol. | phenicol |
| contig_1 | 2197046 | 2197540 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_3 | 81010 | 81495 | dfrG | 0/0 | 98 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_1 | 1199020 | 1200747 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1201306 | 1202360 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2645867 | 2647021 | emeA | 1/27 | 98 | 98 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 1 | 721 | ErmB | 0/0 | 97 | 100 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 4102 | 4847 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 76328 | 77073 | ErmB | 1/1 | 100 | 100 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 14674 | 16101 | fexA | 0/0 | 100 | 100 | AJ549214:176-1604 | fexA is a plasmid-encoded chloramphenicol exporter that is found in Staphylococcus lentus | phenicol |
| contig_1 | 1332177 | 1333673 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 16789 | 18756 | optrA | 0/0 | 100 | 100 | KP399637:31476-33444 | OptrA is a member of the ABC-F protein subfamily that confers resistance to oxazolidinones. The gene encoding the protein was originally isolated from a plasmid in Enterococcus faecalis and Enterococcus faecium. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 2358 | 2900 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_3 | 65134 | 66510 | tet(L) | 0/0 | 100 | 96 | M11036:0-1377 | TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. | tetracycline |
| contig_1 | 461017 | 462936 | tetM | 0/0 | 100 | 99 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_3 | 63016 | 64935 | tetM | 0/0 | 100 | 98 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 2897 | 3805 | (AGly)ant6-Ia | 0/0 | 100 | 99 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_3 | 1471 | 2265 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_3 | 2358 | 2900 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_3 | 36074 | 36922 | (AGly)str | 0/0 | 100 | 100 | X92946:18908-18060 | (AGly)str | NA |
| contig_3 | 1 | 721 | (MLS)erm(B) | 0/0 | 98 | 99 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 4110 | 4847 | (MLS)erm(B) | 0/0 | 100 | 99 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 76328 | 77065 | (MLS)erm(B) | 0/0 | 100 | 99 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1332177 | 1333673 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1890460 | 1891293 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 16789 | 18756 | (Oxzln)OptrA_4 | 0/0 | 100 | 100 | KX620940:1-1968 | (Oxzln)OptrA_4 | NA |
| contig_3 | 67552 | 68199 | (Phe)catA8 | 0/0 | 100 | 99 | NC_009751:21916-22563 | (Phe)catA8 | NA |
| contig_3 | 14674 | 16101 | (Phe)fexA | 0/0 | 100 | 100 | JQ041372:14024-15451 | (Phe)fexA | NA |
| contig_3 | 65134 | 66510 | (Tet)tetL | 0/0 | 100 | 96 | FN435329:1-1377 | (Tet)tetL | NA |
| contig_1 | 461017 | 462936 | (Tet)tetM | 0/0 | 100 | 100 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_3 | 63016 | 64935 | (Tet)tetM | 0/0 | 100 | 98 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2197046 | 2197540 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_3 | 81010 | 81495 | (Tmt)dfrG | 0/0 | 98 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
75125
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 95186 | 96496 | aac(6’)-aph(2’’)_1 | 0/0 | 91 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_3 | 2781778 | 2782326 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_19 | 10843 | 11751 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_19 | 12383 | 13177 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 2101929 | 2102426 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_19 | 6822 | 7584 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 2334877 | 2336355 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 95186 | 96496 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 91 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_3 | 2781778 | 2782326 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_19 | 10921 | 11751 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_19 | 12383 | 13177 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_3 | 2101929 | 2102426 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_3 | 1598460 | 1599746 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_19 | 6847 | 7592 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 2334877 | 2336355 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_19 | 11748 | 12290 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_19 | 19477 | 19962 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 95186 | 96496 | (AGly)aac6-Aph2 | 0/0 | 91 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_3 | 2781778 | 2782326 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_19 | 10843 | 11751 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_19 | 12383 | 13177 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_19 | 11748 | 12290 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_19 | 19477 | 19962 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_19 | 6847 | 7584 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 2334877 | 2336355 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_3 | 2101929 | 2102426 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
75176
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1884801 | 1885349 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_8 | 14123 | 15031 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_8 | 12697 | 13491 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_1 | 1206474 | 1206971 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_8 | 18290 | 19052 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1437900 | 1439378 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_8 | 1115 | 3721 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1884801 | 1885349 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_8 | 14123 | 14953 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_8 | 12697 | 13491 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1206474 | 1206971 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_1 | 702244 | 703530 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_8 | 18282 | 19027 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 1437900 | 1439378 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_8 | 13584 | 14126 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_8 | 1729 | 2760 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_8 | 2753 | 3721 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_8 | 6575 | 7270 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_8 | 5443 | 6597 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_8 | 1115 | 1723 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_8 | 31308 | 31793 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1884801 | 1885349 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_8 | 14123 | 15031 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_8 | 12697 | 13491 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_8 | 13584 | 14126 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_8 | 1729 | 2760 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_8 | 2753 | 3721 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_8 | 6575 | 7270 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_8 | 5443 | 6597 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_8 | 1115 | 1723 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_8 | 31308 | 31793 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_8 | 18290 | 19027 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1437900 | 1439378 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_1 | 1206474 | 1206971 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
75411
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1124361 | 1125123 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1966362 | 1967858 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 474076 | 475995 | tet(M)_10 | 0/0 | 100 | 100 | EU182585 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1040008 | 1040502 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2098904 | 2100631 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2097292 | 2098345 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 598172 | 599326 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 1124353 | 1125098 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 1966362 | 1967858 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 474076 | 475995 | tetM | 0/0 | 100 | 94 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1124361 | 1125098 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1966362 | 1967858 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1390024 | 1390857 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 474076 | 475995 | (Tet)tetM | 0/0 | 100 | 94 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1040008 | 1040502 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
75520
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1029691 | 1031187 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1860825 | 1861319 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 896509 | 898236 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 898795 | 899848 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2314164 | 2315318 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 1029691 | 1031187 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1029691 | 1031187 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1517204 | 1518037 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1860825 | 1861319 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
75582
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2157483 | 2158922 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_2 | 64603 | 65511 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_2 | 63177 | 63971 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 12227 | 12874 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_3 | 30647 | 31294 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_2 | 292 | 1054 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 8098 | 8851 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 26518 | 27271 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 139131 | 140627 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 2827320 | 2829239 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 3142235 | 3144154 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2157483 | 2158922 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_2 | 64603 | 65433 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_2 | 63177 | 63971 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1226410 | 1226904 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 226170 | 226664 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 994956 | 995450 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 3124795 | 3126522 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 3127081 | 3128134 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1712460 | 1713614 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 12227 | 12874 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_3 | 30647 | 31294 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_2 | 284 | 1029 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 8090 | 8835 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 26510 | 27255 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 139131 | 140627 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 64064 | 64606 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 2827320 | 2829239 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 3142235 | 3144154 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2157483 | 2158922 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_2 | 64603 | 65511 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_2 | 63177 | 63971 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 64064 | 64606 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_2 | 292 | 1029 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 8098 | 8835 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 26518 | 27255 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 139131 | 140627 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 858315 | 859148 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 12227 | 12874 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_3 | 30647 | 31294 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 2827320 | 2829239 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 3142235 | 3144154 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1226410 | 1226904 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 226170 | 226664 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_1 | 994956 | 995450 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
75715
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 608485 | 609981 | lsa(A)_3 | 0/0 | 100 | 98 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 1441463 | 1443382 | tet(M)_4 | 0/0 | 100 | 100 | X75073 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2603236 | 2603730 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 741411 | 743138 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 739798 | 740852 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2153755 | 2154909 | emeA | 1/27 | 98 | 98 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 608485 | 609981 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 1441463 | 1443382 | tetM | 0/0 | 100 | 99 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 608485 | 609981 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 48332 | 49165 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1441463 | 1443382 | (Tet)tetM | 0/0 | 100 | 100 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2603236 | 2603730 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
75746
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_9 | 1215790 | 1216338 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_16 | 1539 | 2447 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_16 | 113 | 907 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_9 | 1894168 | 1894665 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_16 | 5706 | 6468 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_9 | 1661761 | 1663239 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_16 | 20116 | 22722 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_9 | 1215790 | 1216338 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_16 | 1539 | 2369 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_16 | 113 | 907 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_9 | 1894168 | 1894665 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_9 | 2397218 | 2398504 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_16 | 5698 | 6443 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_9 | 1661761 | 1663239 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_16 | 1000 | 1542 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_16 | 20730 | 21761 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_16 | 21754 | 22722 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_16 | 25576 | 26271 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 24444 | 25598 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 20116 | 20724 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 17865 | 18350 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_9 | 1215790 | 1216338 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_16 | 1539 | 2447 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_16 | 113 | 907 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_16 | 1000 | 1542 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_16 | 20730 | 21761 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_16 | 21754 | 22722 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_16 | 25576 | 26271 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_16 | 24444 | 25598 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_16 | 20116 | 20724 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_16 | 17865 | 18350 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_16 | 5706 | 6443 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_9 | 1661761 | 1663239 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_9 | 1894168 | 1894665 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
75840
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 28754 | 30193 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_7 | 61902 | 62810 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_7 | 60476 | 61270 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_7 | 66069 | 66831 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 2063840 | 2065336 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 2230229 | 2232157 | tet(M)_13 | 16/19 | 100 | 98 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 2556421 | 2558340 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_7 | 24248 | 26854 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 28754 | 30193 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_7 | 61902 | 62732 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_7 | 60476 | 61270 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 999785 | 1000279 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 1232570 | 1233064 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 2017323 | 2017817 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 2247873 | 2249600 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2246259 | 2247314 | efrB | 7/8 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 514691 | 515845 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_7 | 66061 | 66806 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 2063840 | 2065336 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_7 | 61363 | 61905 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 2230229 | 2232157 | tetM | 16/19 | 100 | 98 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 2556421 | 2558340 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_7 | 25209 | 26240 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_7 | 24248 | 25216 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_7 | 22206 | 22901 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_7 | 22879 | 24033 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_7 | 26246 | 26854 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_7 | 27282 | 28192 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_7 | 28345 | 28830 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 28754 | 30193 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_7 | 61902 | 62810 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_7 | 60476 | 61270 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_7 | 61363 | 61905 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_7 | 25209 | 26240 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_7 | 24248 | 25216 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_7 | 22206 | 22901 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_7 | 22879 | 24033 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_7 | 26246 | 26854 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_7 | 27282 | 28192 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_7 | 28345 | 28830 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_7 | 66069 | 66806 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 2063840 | 2065336 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1367058 | 1367891 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 2230229 | 2232157 | (Tet)tetM | 16/19 | 100 | 98 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2556421 | 2558340 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 999785 | 1000279 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 1232570 | 1233064 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_1 | 2017323 | 2017817 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
76174
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_7 | 672497 | 673045 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_20 | 14168 | 15080 | ant(6)-Ia_1 | 1/4 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_20 | 12742 | 13536 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_7 | 1384256 | 1384753 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_20 | 18339 | 19101 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_7 | 1118924 | 1120402 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_20 | 30614 | 33063 | VanHAX_2 | 0/0 | 94 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_7 | 672497 | 673045 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_20 | 14168 | 14998 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_20 | 12742 | 13536 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_7 | 1384256 | 1384753 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_7 | 1873550 | 1874836 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_20 | 18331 | 19076 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_7 | 1118924 | 1120402 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_20 | 13629 | 14171 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_20 | 31228 | 32259 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_20 | 2650 | 3345 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_20 | 1518 | 2672 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_20 | 30614 | 31222 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_7 | 672497 | 673045 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_20 | 14168 | 15080 | (AGly)ant6-Ia | 1/4 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_20 | 12742 | 13536 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_20 | 13629 | 14171 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_20 | 31228 | 32259 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_20 | 2650 | 3345 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_20 | 1518 | 2672 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_20 | 30614 | 31222 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_20 | 18339 | 19076 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_7 | 1118924 | 1120402 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_7 | 1384256 | 1384753 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
76302
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 395342 | 396838 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1341822 | 1342316 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 263966 | 265693 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 266252 | 267305 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1820116 | 1821270 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 395342 | 396838 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 395342 | 396838 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 997522 | 998355 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1341822 | 1342316 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
76304
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1065916 | 1067412 | lsa(A)_3 | 0/0 | 100 | 98 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 229465 | 231384 | tet(M)_4 | 0/0 | 100 | 100 | X75073 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1934909 | 1935403 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 932758 | 934485 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 935044 | 936098 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2382226 | 2383380 | emeA | 1/27 | 98 | 98 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 1065916 | 1067412 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 229465 | 231384 | tetM | 0/0 | 100 | 99 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1065916 | 1067412 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1624206 | 1625039 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 229465 | 231384 | (Tet)tetM | 0/0 | 100 | 100 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1934909 | 1935403 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
76646
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1940942 | 1941439 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_2 | 93075 | 93572 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_2 | 9219 | 9981 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1406760 | 1408256 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 201016 | 202935 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2310944 | 2311438 | dfrE | 0/0 | 100 | 100 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 1940942 | 1941439 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_2 | 93075 | 93572 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_1 | 1273048 | 1274775 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1275334 | 1276387 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2749218 | 2750372 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_2 | 9211 | 9956 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 1406760 | 1408256 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 201016 | 202935 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 9219 | 9956 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1406760 | 1408256 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1976366 | 1977199 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 201016 | 202935 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2310944 | 2311438 | (Tmt)dfrE | 0/0 | 100 | 100 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 1940942 | 1941439 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
| contig_2 | 93075 | 93572 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
76746
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2070259 | 2071755 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1192550 | 1193044 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2241489 | 2243216 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2239877 | 2240930 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 741520 | 742674 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 2070259 | 2071755 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2070259 | 2071755 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1521307 | 1522140 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1192550 | 1193044 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
76793
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2515245 | 2516741 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1658348 | 1658842 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2650580 | 2652307 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2648968 | 2650021 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1228097 | 1229251 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 2515245 | 2516741 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2515245 | 2516741 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1982256 | 1983089 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1658348 | 1658842 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
76952
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2442203 | 2443699 | lsa(A)_1 | 0/0 | 100 | 100 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 1158650 | 1160590 | tet(S)_3 | 0/0 | 100 | 100 | X92946 | tet(S) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1541653 | 1542147 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2577387 | 2579114 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2575775 | 2576828 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1061108 | 1062262 | emeA | 1/27 | 98 | 98 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 2442203 | 2443699 | lsaA | 0/0 | 100 | 100 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 1158650 | 1160575 | tetS | 0/0 | 100 | 100 | L09756:0-1926 | Tet(S) is a ribosomal protection protein found in Gram-positive and Gram-negative strains. It is similar to tet(M) and tet(O). | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2442203 | 2443699 | (MLS)lsa(A) | 0/0 | 100 | 100 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1882854 | 1883687 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1158650 | 1160575 | (Tet)tetS | 0/0 | 100 | 100 | L09756:447-2372 | (Tet)tetS | NA |
| contig_1 | 1541653 | 1542147 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
76967
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 1618776 | 1619324 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_22 | 10546 | 11454 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_22 | 12086 | 12880 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 2297154 | 2297651 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_22 | 6525 | 7287 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 2064747 | 2066225 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 1618776 | 1619324 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_22 | 10624 | 11454 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_22 | 12086 | 12880 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_3 | 2297154 | 2297651 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_3 | 2798769 | 2800055 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_22 | 6550 | 7295 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 2064747 | 2066225 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_22 | 11451 | 11993 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 1618776 | 1619324 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_22 | 10546 | 11454 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_22 | 12086 | 12880 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_22 | 11451 | 11993 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_22 | 6550 | 7287 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 2064747 | 2066225 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_3 | 2297154 | 2297651 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
76985
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1916285 | 1917781 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 669287 | 671227 | tet(S)_3 | 0/0 | 100 | 100 | X92946 | tet(S) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1050669 | 1051163 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2051252 | 2052979 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2049640 | 2050693 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 571746 | 572900 | emeA | 1/27 | 98 | 98 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 1916285 | 1917781 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 669287 | 671212 | tetS | 0/0 | 100 | 100 | L09756:0-1926 | Tet(S) is a ribosomal protection protein found in Gram-positive and Gram-negative strains. It is similar to tet(M) and tet(O). | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1916285 | 1917781 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1390299 | 1391132 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 669287 | 671212 | (Tet)tetS | 0/0 | 100 | 100 | L09756:447-2372 | (Tet)tetS | NA |
| contig_1 | 1050669 | 1051163 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
77019
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1959113 | 1960609 | lsa(A)_3 | 0/0 | 100 | 100 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 2490928 | 2492847 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 977511 | 978005 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2092430 | 2094157 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2090818 | 2091871 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 529271 | 530425 | emeA | 1/27 | 98 | 98 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 1959113 | 1960609 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 2490928 | 2492847 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1959113 | 1960609 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1316644 | 1317477 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 2490928 | 2492847 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 977511 | 978005 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
77340
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 68436 | 69746 | aac(6’)-aph(2’’)_1 | 0/0 | 91 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_10 | 2405437 | 2405985 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_7 | 18212 | 19120 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_7 | 16786 | 17580 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_10 | 1722533 | 1723030 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_7 | 22379 | 23141 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_10 | 1953958 | 1955436 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_7 | 5204 | 7810 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 68436 | 69746 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 91 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_10 | 2405437 | 2405985 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_7 | 18212 | 19042 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_7 | 16786 | 17580 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_10 | 1722533 | 1723030 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_10 | 1215203 | 1216489 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_7 | 22371 | 23116 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_10 | 1953958 | 1955436 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_7 | 17673 | 18215 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_7 | 5818 | 6849 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_7 | 6842 | 7810 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_7 | 10664 | 11359 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_7 | 9532 | 10686 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_7 | 5204 | 5812 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_7 | 2953 | 3438 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 68436 | 69746 | (AGly)aac6-Aph2 | 0/0 | 91 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_10 | 2405437 | 2405985 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_7 | 18212 | 19120 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_7 | 16786 | 17580 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_7 | 17673 | 18215 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_7 | 5818 | 6849 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_7 | 6842 | 7810 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_7 | 10664 | 11359 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_7 | 9532 | 10686 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_7 | 5204 | 5812 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_7 | 2953 | 3438 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_7 | 22379 | 23116 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_10 | 1953958 | 1955436 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_10 | 1722533 | 1723030 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
77364
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2091078 | 2092517 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_2 | 21044 | 21952 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_2 | 22584 | 23378 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_5 | 4202 | 4849 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_2 | 17023 | 17785 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_5 | 73 | 826 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 73760 | 75256 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 2759350 | 2761269 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 3074266 | 3076185 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2091078 | 2092517 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_2 | 21122 | 21952 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_2 | 22584 | 23378 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1160004 | 1160498 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 160799 | 161293 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 928550 | 929044 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 3056826 | 3058553 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 3059112 | 3060165 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1644723 | 1645877 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_5 | 4202 | 4849 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_2 | 17048 | 17793 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_5 | 65 | 810 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 73760 | 75256 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 21949 | 22491 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 2759350 | 2761269 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 3074266 | 3076185 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2091078 | 2092517 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_2 | 21044 | 21952 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_2 | 22584 | 23378 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 21949 | 22491 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_2 | 17048 | 17785 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_5 | 73 | 810 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 73760 | 75256 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 791909 | 792742 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_5 | 4202 | 4849 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 2759350 | 2761269 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 3074266 | 3076185 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1160004 | 1160498 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 160799 | 161293 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_1 | 928550 | 929044 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
77448
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 109545 | 110855 | aac(6’)-aph(2’’)_1 | 0/0 | 91 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_2 | 1457460 | 1458008 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_20 | 10197 | 11105 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_20 | 8771 | 9565 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_2 | 774610 | 775107 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_20 | 14364 | 15126 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 1006035 | 1007513 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_20 | 29633 | 32239 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 109545 | 110855 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 91 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_2 | 1457460 | 1458008 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_20 | 10197 | 11027 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_20 | 8771 | 9565 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_2 | 774610 | 775107 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_2 | 267279 | 268565 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_20 | 14356 | 15101 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 1006035 | 1007513 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_20 | 9658 | 10200 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_20 | 30247 | 31278 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_20 | 31271 | 32239 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_20 | 2649 | 3344 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_20 | 1517 | 2671 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_20 | 29633 | 30241 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_20 | 27382 | 27867 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 109545 | 110855 | (AGly)aac6-Aph2 | 0/0 | 91 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_2 | 1457460 | 1458008 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_20 | 10197 | 11105 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_20 | 8771 | 9565 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_20 | 9658 | 10200 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_20 | 30247 | 31278 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_20 | 31271 | 32239 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_20 | 2649 | 3344 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_20 | 1517 | 2671 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_20 | 29633 | 30241 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_20 | 27382 | 27867 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_20 | 14364 | 15101 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 1006035 | 1007513 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_2 | 774610 | 775107 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
77566
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 463887 | 464795 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_4 | 465365 | 466159 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_4 | 466884 | 467646 | erm(B)_18 | 1/1 | 100 | 100 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 170780 | 172276 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_3 | 3990 | 5909 | tet(M)_4 | 0/0 | 100 | 100 | X75073 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 463965 | 464795 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_4 | 465365 | 466159 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_4 | 1089824 | 1090318 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_4 | 35322 | 37049 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_4 | 37608 | 38661 | efrB | 4/4 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_4 | 1537092 | 1538246 | emeA | 1/27 | 98 | 98 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_4 | 466909 | 467654 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 170780 | 172276 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 3990 | 5909 | tetM | 0/0 | 100 | 99 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 463887 | 464795 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_4 | 465365 | 466159 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_4 | 466909 | 467646 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 170780 | 172276 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_4 | 786758 | 787591 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 3990 | 5909 | (Tet)tetM | 0/0 | 100 | 100 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_4 | 1089824 | 1090318 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
77655
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 300922 | 302361 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_17 | 25823 | 26470 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_17 | 21814 | 22551 | erm(B)_12 | 0/0 | 100 | 100 | U18931 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_25 | 68009 | 69505 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 300922 | 302361 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_1 | 13379 | 13873 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 246165 | 246660 | dfrF | 1/1 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_8 | 42168 | 42662 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_6 | 24631 | 26358 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_6 | 23019 | 24072 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_7 | 22190 | 23344 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_17 | 25823 | 26470 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_17 | 21806 | 22551 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_25 | 68009 | 69505 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 300922 | 302361 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_17 | 21814 | 22551 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_25 | 68009 | 69505 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 382495 | 383328 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_17 | 25823 | 26470 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 13379 | 13873 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 246165 | 246660 | (Tmt)dfrF | 1/1 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_8 | 42168 | 42662 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
77771
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 1409188 | 1410627 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_3 | 1406795 | 1407589 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 1400742 | 1401504 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 1411454 | 1412216 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 2250387 | 2251883 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_3 | 750434 | 752353 | tet(M)_10 | 0/0 | 100 | 100 | EU182585 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 1409188 | 1410627 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_3 | 1408221 | 1409020 | aad(6) | 0/0 | 96 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_3 | 1406795 | 1407589 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_3 | 1316342 | 1316836 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_3 | 2382930 | 2384657 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_3 | 2381318 | 2382371 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_3 | 874529 | 875683 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 1400734 | 1401479 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 1411446 | 1412191 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 2250387 | 2251883 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 1407682 | 1408224 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_3 | 750434 | 752353 | tetM | 0/0 | 100 | 94 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 1409188 | 1410627 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_3 | 1406795 | 1407589 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_3 | 1407682 | 1408224 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_3 | 1400742 | 1401479 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 1411454 | 1412191 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 2250387 | 2251883 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_3 | 1675761 | 1676594 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 750434 | 752353 | (Tet)tetM | 0/0 | 100 | 94 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_3 | 1316342 | 1316836 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
77804
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1950784 | 1952280 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1039035 | 1039529 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2081929 | 2083656 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2080317 | 2081370 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 548347 | 549501 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 1950784 | 1952280 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1950784 | 1952280 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1350464 | 1351297 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1039035 | 1039529 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
78036
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 105445 | 106884 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_3 | 8854 | 9501 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_4 | 40921 | 41568 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_4 | 68445 | 69207 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 91390 | 92152 | erm(B)_18 | 1/1 | 100 | 100 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 2829445 | 2830941 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 2963667 | 2965586 | tet(M)_1 | 0/0 | 100 | 100 | X92947 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_2 | 50912 | 53518 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 105445 | 106884 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_1 | 1830854 | 1831348 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2063524 | 2064018 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 2981157 | 2982884 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2979545 | 2980598 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1350022 | 1351175 | emeA | 2/28 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 8854 | 9501 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_4 | 40921 | 41568 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_4 | 68437 | 69182 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 91382 | 92127 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 2829445 | 2830941 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 2963667 | 2965586 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_2 | 51526 | 52557 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_2 | 52550 | 53518 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_2 | 54865 | 55560 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 53733 | 54887 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 50912 | 51520 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 49574 | 50484 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 48936 | 49421 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 105445 | 106884 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_2 | 51526 | 52557 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_2 | 52550 | 53518 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_2 | 54865 | 55560 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_2 | 53733 | 54887 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_2 | 50912 | 51520 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_2 | 49574 | 50484 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_2 | 48936 | 49421 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_4 | 68445 | 69182 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 91390 | 92127 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 2829445 | 2830941 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 2198822 | 2199655 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 8854 | 9501 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_4 | 40921 | 41568 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 2963667 | 2965586 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1830854 | 1831348 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 2063524 | 2064018 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
78039
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_6 | 54382 | 55692 | aac(6’)-aph(2’’)_1 | 0/0 | 91 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_8 | 1959336 | 1959884 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_12 | 16494 | 17402 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_12 | 15068 | 15862 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_8 | 2642858 | 2643355 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_12 | 2035 | 2797 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_8 | 2410452 | 2411930 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_6 | 54382 | 55692 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 91 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_8 | 1959336 | 1959884 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_12 | 16494 | 17324 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_12 | 15068 | 15862 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_8 | 2642858 | 2643355 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_8 | 307220 | 308506 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_12 | 2027 | 2772 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_8 | 2410452 | 2411930 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_12 | 15955 | 16497 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_6 | 54382 | 55692 | (AGly)aac6-Aph2 | 0/0 | 91 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_8 | 1959336 | 1959884 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_12 | 16494 | 17402 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_12 | 15068 | 15862 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_12 | 15955 | 16497 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_12 | 2035 | 2772 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_8 | 2410452 | 2411930 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_8 | 2642858 | 2643355 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
78041
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 226623 | 227171 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_12 | 3030 | 3938 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_19 | 8393 | 9301 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_19 | 27019 | 27927 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_12 | 1604 | 2398 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_19 | 9933 | 10727 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_19 | 28559 | 29353 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_2 | 2366722 | 2367219 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_12 | 7197 | 7959 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_19 | 4372 | 5134 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_19 | 22998 | 23760 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 2598147 | 2599625 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 226623 | 227171 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_12 | 3030 | 3860 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_19 | 8471 | 9301 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_19 | 27097 | 27927 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_12 | 1604 | 2398 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_19 | 9933 | 10727 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_19 | 28559 | 29353 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_2 | 2366722 | 2367219 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_2 | 1864390 | 1865676 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_12 | 7189 | 7934 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_19 | 4397 | 5142 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_19 | 23023 | 23768 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 2598147 | 2599625 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_12 | 2491 | 3033 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_19 | 9298 | 9840 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_19 | 27924 | 28466 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 226623 | 227171 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_12 | 3030 | 3938 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_19 | 8393 | 9301 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_19 | 27019 | 27927 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_12 | 1604 | 2398 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_19 | 9933 | 10727 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_19 | 28559 | 29353 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_12 | 2491 | 3033 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_19 | 9298 | 9840 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_19 | 27924 | 28466 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_12 | 7197 | 7934 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_19 | 4397 | 5134 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_19 | 23023 | 23760 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 2598147 | 2599625 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_2 | 2366722 | 2367219 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
78203
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 425538 | 426086 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_16 | 22106 | 23014 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_16 | 20680 | 21474 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_4 | 1108026 | 1108523 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_16 | 26273 | 27035 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 874554 | 876032 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_16 | 9098 | 11704 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 425538 | 426086 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_16 | 22106 | 22936 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_16 | 20680 | 21474 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_4 | 1108026 | 1108523 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_4 | 1615390 | 1616676 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_16 | 26265 | 27010 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 874554 | 876032 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_16 | 21567 | 22109 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_16 | 9712 | 10743 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_16 | 10736 | 11704 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_16 | 14558 | 15253 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 13426 | 14580 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 9098 | 9706 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 6847 | 7332 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 425538 | 426086 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_16 | 22106 | 23014 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_16 | 20680 | 21474 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_16 | 21567 | 22109 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_16 | 9712 | 10743 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_16 | 10736 | 11704 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_16 | 14558 | 15253 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_16 | 13426 | 14580 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_16 | 9098 | 9706 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_16 | 6847 | 7332 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_16 | 26273 | 27010 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 874554 | 876032 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_4 | 1108026 | 1108523 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
78272
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_9 | 51086 | 51880 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_14 | 352025 | 352522 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_9 | 48749 | 49246 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_15 | 26079 | 26841 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_9 | 51884 | 52646 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_14 | 2061482 | 2062285 | lnu(G)_1 | 0/0 | 100 | 100 | KX470419 | lnu(G) | Lincomycin |
| contig_14 | 1925341 | 1926837 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_9 | 51086 | 51880 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_14 | 1027773 | 1028267 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_14 | 352025 | 352522 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_9 | 48749 | 49246 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_14 | 2056203 | 2057930 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_14 | 2054590 | 2055644 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_14 | 593993 | 595147 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_15 | 26071 | 26816 | ErmB | 1/1 | 100 | 100 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_9 | 51886 | 52621 | ErmB | 0/0 | 99 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_14 | 2061482 | 2062285 | lnuG | 0/0 | 100 | 100 | KX470419.1:3811-4615 | lnuG is a transposon-mediated lincosamide nucleotidyltransferase found in Enterococcus faecalis on Tn6260. | lincosamide |
| contig_14 | 1925341 | 1926837 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_9 | 51086 | 51880 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_15 | 26079 | 26816 | (MLS)erm(B) | 0/0 | 100 | 99 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_9 | 51884 | 52621 | (MLS)erm(B) | 0/0 | 100 | 99 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_14 | 1925341 | 1926837 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_14 | 1351092 | 1351925 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_14 | 1027773 | 1028267 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_14 | 352025 | 352522 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
| contig_9 | 48749 | 49246 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
78438
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 482339 | 482887 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_2 | 149289 | 150197 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_2 | 159608 | 160513 | aph(2’’)-Id_1 | 0/0 | 100 | 100 | AF016483 | aph(2’’)-Id | Amikacin, Gentamicin, Tobramycin |
| contig_2 | 147863 | 148657 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_1 | 897089 | 897586 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_2 | 146376 | 147138 | erm(B)_18 | 1/1 | 100 | 100 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 153705 | 154508 | lnu(B)_2 | 0/0 | 100 | 100 | JQ861959 | lnu(B) | Lincomycin, Clindamycin |
| contig_2 | 154562 | 156046 | lsa(E)_1 | 0/0 | 100 | 100 | JX560992 | lsa(E) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M, Tiamulin |
| contig_1 | 92840 | 94318 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 2442097 | 2443439 | tet(L)_2 | 0/0 | 98 | 100 | M29725 | tet(L) | Doxycycline, Tetracycline |
| contig_1 | 2443568 | 2445487 | tet(M)_10 | 0/0 | 100 | 98 | EU182585 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 482339 | 482887 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_2 | 149289 | 150119 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_2 | 159608 | 160513 | APH(2’’)-IVa | 0/0 | 100 | 100 | AF016483:0-906 | APH(2’’)-IVa is a chromosomal-encoded aminoglycoside phosphotransferase in E. casseliflavus | aminoglycoside |
| contig_2 | 147863 | 148657 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 897089 | 897586 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_1 | 2118031 | 2119317 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_2 | 146368 | 147113 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 153705 | 154508 | lsaE | 0/0 | 100 | 100 | AF408195.1:9446-10250 | lsaE is an ABC-F subfamily protein found in porcine MRSA isolates. It confers resistance to pleuromutilin lincosamide and streptogramin A | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 92840 | 94318 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 148750 | 149292 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 2442097 | 2443439 | tet(L) | 0/0 | 98 | 100 | M11036:0-1377 | TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. | tetracycline |
| contig_1 | 2443568 | 2445487 | tetM | 0/0 | 100 | 96 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 482339 | 482887 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_2 | 149289 | 150197 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_2 | 159608 | 160513 | (AGly)aph(2’’)-Id | 0/0 | 100 | 100 | AF016483:131-1036 | (AGly)aph(2’’)-Id | NA |
| contig_2 | 147863 | 148657 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 148750 | 149292 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_2 | 146376 | 147113 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 153705 | 154508 | (MLS)lnu((B) | 0/0 | 100 | 100 | KC688833:1-804 | (MLS)lnu((B) | NA |
| contig_1 | 92840 | 94318 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_1 | 2442097 | 2443439 | (Tet)tetL | 0/0 | 98 | 100 | FN435329:1-1377 | (Tet)tetL | NA |
| contig_1 | 2443568 | 2445487 | (Tet)tetM | 0/0 | 100 | 97 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 897089 | 897586 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
78506
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 3109997 | 3111436 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_3 | 64383 | 65291 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_3 | 62957 | 63751 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_4 | 2484 | 3131 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_3 | 72 | 834 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 16775 | 17528 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 1054278 | 1055774 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_2 | 570612 | 572531 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_2 | 886860 | 888779 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 3109997 | 3111436 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_3 | 64383 | 65213 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_3 | 62957 | 63751 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_2 | 2141558 | 2142052 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_2 | 1141317 | 1141811 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_2 | 1910104 | 1910598 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_2 | 869420 | 871147 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 871706 | 872759 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 2626277 | 2627431 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_4 | 2484 | 3131 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_3 | 64 | 809 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 16767 | 17512 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 1054278 | 1055774 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 63844 | 64386 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_2 | 570612 | 572531 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_2 | 886860 | 888779 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 3109997 | 3111436 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_3 | 64383 | 65291 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_3 | 62957 | 63751 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_3 | 63844 | 64386 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_3 | 72 | 809 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 16775 | 17512 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 1054278 | 1055774 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_2 | 1773463 | 1774296 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_4 | 2484 | 3131 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_2 | 570612 | 572531 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 886860 | 888779 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 2141558 | 2142052 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_2 | 1141317 | 1141811 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_2 | 1910104 | 1910598 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
78507
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 81584 | 82492 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_2 | 83124 | 83918 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_2 | 603 | 1365 | erm(B)_18 | 1/1 | 100 | 100 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 62851 | 63613 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 2650943 | 2652439 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_2 | 13950 | 15326 | tet(L)_2 | 0/0 | 100 | 100 | M29725 | tet(L) | Doxycycline, Tetracycline |
| contig_2 | 15520 | 17439 | tet(M)_10 | 0/0 | 100 | 96 | EU182585 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 81662 | 82492 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_2 | 83124 | 83918 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1739479 | 1739973 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 30063 | 31790 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 28451 | 29504 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1292699 | 1293853 | emeA | 1/27 | 98 | 98 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_2 | 628 | 1373 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 62843 | 63588 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 2650943 | 2652439 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 82489 | 83031 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_2 | 13950 | 15326 | tet(L) | 0/0 | 100 | 100 | M11036:0-1377 | TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. | tetracycline |
| contig_2 | 15520 | 17439 | tetM | 0/0 | 100 | 95 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 81584 | 82492 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_2 | 83124 | 83918 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 82489 | 83031 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_2 | 628 | 1365 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 62851 | 63588 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 2650943 | 2652439 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 2071219 | 2072052 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_2 | 13950 | 15326 | (Tet)tetL | 0/0 | 100 | 100 | FN435329:1-1377 | (Tet)tetL | NA |
| contig_2 | 15520 | 17439 | (Tet)tetM | 0/0 | 100 | 96 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1739479 | 1739973 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
78555
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 1801101 | 1801649 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_10 | 22108 | 23016 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_10 | 20682 | 21476 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 1118664 | 1119161 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_10 | 26275 | 27037 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 1351155 | 1352633 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_10 | 9099 | 11705 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 1801101 | 1801649 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_10 | 22108 | 22938 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_10 | 20682 | 21476 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_3 | 1118664 | 1119161 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_3 | 610511 | 611797 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_10 | 26267 | 27012 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 1351155 | 1352633 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_10 | 21569 | 22111 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_10 | 9713 | 10744 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_10 | 10737 | 11705 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_10 | 14559 | 15254 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_10 | 13427 | 14581 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_10 | 9099 | 9707 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_10 | 6848 | 7333 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 1801101 | 1801649 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_10 | 22108 | 23016 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_10 | 20682 | 21476 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_10 | 21569 | 22111 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_10 | 9713 | 10744 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_10 | 10737 | 11705 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_10 | 14559 | 15254 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_10 | 13427 | 14581 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_10 | 9099 | 9707 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_10 | 6848 | 7333 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_10 | 26275 | 27012 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 1351155 | 1352633 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_3 | 1118664 | 1119161 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
78894
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 2640208 | 2640756 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_9 | 9022 | 9930 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_9 | 10562 | 11356 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_2 | 486550 | 487047 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_9 | 5001 | 5763 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 254144 | 255622 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 2640208 | 2640756 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_9 | 9100 | 9930 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_9 | 10562 | 11356 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_2 | 486550 | 487047 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_2 | 992972 | 994258 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_9 | 5026 | 5771 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 254144 | 255622 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_9 | 9927 | 10469 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 2640208 | 2640756 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_9 | 9022 | 9930 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_9 | 10562 | 11356 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_9 | 9927 | 10469 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_9 | 5026 | 5763 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 254144 | 255622 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_2 | 486550 | 487047 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
79576
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 54755 | 56194 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_4 | 32516 | 33163 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_4 | 15679 | 16441 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 2238960 | 2240456 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_2 | 2408162 | 2410081 | tet(M)_1 | 0/0 | 100 | 100 | X92947 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 50913 | 53519 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 54755 | 56194 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_2 | 1119389 | 1119883 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_2 | 1352059 | 1352553 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_2 | 2425652 | 2427379 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 2424040 | 2425093 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 637222 | 638376 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_4 | 32516 | 33163 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_4 | 15671 | 16416 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 2238960 | 2240456 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 2408162 | 2410081 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 51527 | 52558 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_1 | 52551 | 53519 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_1 | 54866 | 55561 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 53734 | 54888 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 50913 | 51521 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 49575 | 50485 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 48937 | 49422 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 54755 | 56194 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_1 | 51527 | 52558 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_1 | 52551 | 53519 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_1 | 54866 | 55561 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_1 | 53734 | 54888 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_1 | 50913 | 51521 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_1 | 49575 | 50485 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_1 | 48937 | 49422 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_4 | 15679 | 16416 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 2238960 | 2240456 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_2 | 1487355 | 1488188 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_4 | 32516 | 33163 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_2 | 2408162 | 2410081 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 1119389 | 1119883 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_2 | 1352059 | 1352553 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
79578
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 16879 | 17673 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_2 | 14542 | 15039 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_2 | 17677 | 18439 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 476869 | 478365 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 16879 | 17673 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1360540 | 1361034 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_2 | 14542 | 15039 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_1 | 344087 | 345814 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 346373 | 347426 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1815872 | 1817026 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_2 | 17679 | 18414 | ErmB | 0/0 | 99 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 476869 | 478365 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 16879 | 17673 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 17677 | 18414 | (MLS)erm(B) | 0/0 | 100 | 99 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 476869 | 478365 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1360540 | 1361034 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_2 | 14542 | 15039 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
79579
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 155343 | 156782 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_3 | 10276 | 11184 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_3 | 8850 | 9644 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 14443 | 15205 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 2194826 | 2196322 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 2361033 | 2362952 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 2685825 | 2687744 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_2 | 6066 | 8672 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 155343 | 156782 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_3 | 10276 | 11106 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_3 | 8850 | 9644 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1084405 | 1084899 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 1354417 | 1354911 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 2148309 | 2148803 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 2378665 | 2380392 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2377053 | 2378106 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 599308 | 600462 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 14435 | 15180 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 2194826 | 2196322 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 9737 | 10279 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 2361033 | 2362952 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 2685825 | 2687744 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_2 | 6680 | 7711 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_2 | 7704 | 8672 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_2 | 10019 | 10714 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 8887 | 10041 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 6066 | 6674 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 4728 | 5638 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 4090 | 4575 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 155343 | 156782 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_3 | 10276 | 11184 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_3 | 8850 | 9644 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_3 | 9737 | 10279 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_2 | 6680 | 7711 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_2 | 7704 | 8672 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_2 | 10019 | 10714 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_2 | 8887 | 10041 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_2 | 6066 | 6674 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_2 | 4728 | 5638 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_2 | 4090 | 4575 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_3 | 14443 | 15180 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 2194826 | 2196322 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1493360 | 1494193 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 2361033 | 2362952 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2685825 | 2687744 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1084405 | 1084899 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 1354417 | 1354911 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_1 | 2148309 | 2148803 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
79707
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 331183 | 332679 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2322947 | 2323441 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 1308578 | 1310305 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1310864 | 1311917 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1833848 | 1835002 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 331183 | 332679 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 331183 | 332679 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 2643171 | 2644004 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 2322947 | 2323441 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
79867
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1358353 | 1359849 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2249219 | 2249713 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 1222791 | 1224518 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1225077 | 1226130 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2670930 | 2672084 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 1358353 | 1359849 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1358353 | 1359849 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1888711 | 1889544 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 2249219 | 2249713 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
80213
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 3078040 | 3079479 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_5 | 4922 | 5830 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_5 | 6462 | 7256 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_6 | 15292 | 15939 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_5 | 901 | 1663 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_6 | 895 | 1648 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1062324 | 1063820 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 579991 | 581910 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 894906 | 896825 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 3078040 | 3079479 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_5 | 5000 | 5830 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_5 | 6462 | 7256 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 2150960 | 2151454 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 1149386 | 1149880 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 1919506 | 1920000 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 877466 | 879193 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 879752 | 880805 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2634348 | 2635502 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_6 | 15292 | 15939 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_5 | 926 | 1671 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_6 | 911 | 1656 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 1062324 | 1063820 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_5 | 5827 | 6369 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 579991 | 581910 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 894906 | 896825 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 3078040 | 3079479 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_5 | 4922 | 5830 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_5 | 6462 | 7256 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_5 | 5827 | 6369 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_5 | 926 | 1663 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_6 | 911 | 1648 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1062324 | 1063820 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1781533 | 1782366 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_6 | 15292 | 15939 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 579991 | 581910 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 894906 | 896825 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2150960 | 2151454 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 1149386 | 1149880 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_1 | 1919506 | 1920000 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
80275
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 10744 | 11652 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_2 | 12284 | 13078 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_2 | 13799 | 14561 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 1903703 | 1905199 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_2 | 27146 | 28522 | tet(L)_2 | 0/0 | 100 | 100 | M29725 | tet(L) | Doxycycline, Tetracycline |
| contig_2 | 28716 | 30635 | tet(M)_10 | 0/0 | 100 | 96 | EU182585 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 10822 | 11652 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_2 | 12284 | 13078 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_3 | 1109008 | 1109502 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_3 | 2073382 | 2075109 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_3 | 2071770 | 2072823 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_3 | 1556531 | 1557685 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_2 | 13824 | 14569 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 1903703 | 1905199 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 11649 | 12191 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_2 | 27146 | 28522 | tet(L) | 0/0 | 100 | 100 | M11036:0-1377 | TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. | tetracycline |
| contig_2 | 28716 | 30635 | tetM | 0/0 | 100 | 95 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 10744 | 11652 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_2 | 12284 | 13078 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 11649 | 12191 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_2 | 13824 | 14561 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 1903703 | 1905199 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_3 | 785046 | 785879 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_2 | 27146 | 28522 | (Tet)tetL | 0/0 | 100 | 100 | FN435329:1-1377 | (Tet)tetL | NA |
| contig_2 | 28716 | 30635 | (Tet)tetM | 0/0 | 100 | 96 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_3 | 1109008 | 1109502 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
80343
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 33053 | 33700 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_4 | 16019 | 16781 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 2381159 | 2382655 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 2211535 | 2213454 | tet(M)_1 | 0/0 | 100 | 100 | X92947 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_2 | 74636 | 77242 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 226342 | 226836 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 3151254 | 3151748 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 2194237 | 2195964 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2196523 | 2197576 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 706514 | 707668 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_4 | 33053 | 33700 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_4 | 16011 | 16756 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 2381159 | 2382655 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 2211535 | 2213454 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_2 | 75597 | 76628 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_2 | 74636 | 75604 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_2 | 72594 | 73289 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 73267 | 74421 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 76634 | 77242 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 77670 | 78580 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_2 | 78733 | 79218 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 75597 | 76628 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_2 | 74636 | 75604 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_2 | 72594 | 73289 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_2 | 73267 | 74421 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_2 | 76634 | 77242 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_2 | 77670 | 78580 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_2 | 78733 | 79218 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_4 | 16019 | 16756 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 2381159 | 2382655 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 3015620 | 3016453 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_4 | 33053 | 33700 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 2211535 | 2213454 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 226342 | 226836 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 3151254 | 3151748 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
80344
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1708088 | 1709527 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_4 | 22269 | 23177 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_4 | 20843 | 21637 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 12446 | 13056 | cat(pC221)_1 | 0/0 | 94 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_4 | 26436 | 27198 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 511643 | 513139 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 679993 | 681912 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 1013596 | 1015515 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_4 | 3265 | 5871 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
| contig_5 | 29616 | 32222 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1708088 | 1709527 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_4 | 22269 | 23099 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_4 | 20843 | 21637 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 2716256 | 2716750 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 465126 | 465620 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 2947709 | 2948203 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 697625 | 699352 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 696013 | 697066 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2190828 | 2191982 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 12446 | 13056 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 94 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_4 | 26428 | 27173 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 511643 | 513139 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_4 | 21730 | 22272 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 679993 | 681912 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 1013596 | 1015515 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_4 | 4226 | 5257 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_5 | 30577 | 31608 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_4 | 3265 | 4233 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_5 | 29616 | 30584 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_4 | 1223 | 1918 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_5 | 27574 | 28269 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 1896 | 3050 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_5 | 28247 | 29401 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 5263 | 5871 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_5 | 31614 | 32222 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 6299 | 7209 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_5 | 32650 | 33560 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 7362 | 7847 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
| contig_5 | 33713 | 34198 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1708088 | 1709527 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_4 | 22269 | 23177 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_4 | 20843 | 21637 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_4 | 21730 | 22272 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_4 | 4226 | 5257 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_5 | 30577 | 31608 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_4 | 3265 | 4233 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_5 | 29616 | 30584 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_4 | 1223 | 1918 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_5 | 27574 | 28269 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_4 | 1896 | 3050 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_5 | 28247 | 29401 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_4 | 5263 | 5871 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_5 | 31614 | 32222 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_4 | 6299 | 7209 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_5 | 32650 | 33560 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_4 | 7362 | 7847 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_5 | 33713 | 34198 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_4 | 26436 | 27173 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 511643 | 513139 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 3085391 | 3086224 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 12446 | 13056 | (Phe)cat-pC221 | 0/0 | 94 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 679993 | 681912 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1013596 | 1015515 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2716256 | 2716750 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 465126 | 465620 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_1 | 2947709 | 2948203 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
80411
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 587988 | 589484 | lsa(A)_3 | 0/0 | 100 | 100 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_3 | 1530216 | 1532135 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 2660431 | 2660925 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_3 | 757353 | 759080 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_3 | 755741 | 756794 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_3 | 2177695 | 2178849 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 587988 | 589484 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 1530216 | 1532135 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 587988 | 589484 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_3 | 70938 | 71771 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 1530216 | 1532135 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_3 | 2660431 | 2660925 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
80564
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 3078132 | 3079571 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_3 | 4922 | 5830 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_3 | 6462 | 7256 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_1 | 5899 | 6546 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_1 | 9922 | 10675 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 901 | 1663 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 1062400 | 1063896 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_2 | 579992 | 581911 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_2 | 894982 | 896901 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 3078132 | 3079571 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_3 | 5000 | 5830 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_3 | 6462 | 7256 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_2 | 2151053 | 2151547 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_2 | 1149462 | 1149956 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_2 | 1919599 | 1920093 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_2 | 877542 | 879269 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 879828 | 880881 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 2634439 | 2635593 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 5899 | 6546 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_1 | 9938 | 10683 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 926 | 1671 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 1062400 | 1063896 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 5827 | 6369 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_2 | 579992 | 581911 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_2 | 894982 | 896901 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 3078132 | 3079571 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_3 | 4922 | 5830 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_3 | 6462 | 7256 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_3 | 5827 | 6369 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_1 | 9938 | 10675 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 926 | 1663 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 1062400 | 1063896 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_2 | 1781603 | 1782436 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 5899 | 6546 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_2 | 579992 | 581911 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 894982 | 896901 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 2151053 | 2151547 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_2 | 1149462 | 1149956 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_2 | 1919599 | 1920093 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
80725
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_5 | 129429 | 130739 | aac(6’)-aph(2’’)_1 | 0/0 | 91 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_7 | 1270164 | 1270712 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_13 | 14691 | 15603 | ant(6)-Ia_1 | 1/4 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_13 | 16235 | 17029 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_7 | 705426 | 705923 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_13 | 10670 | 11432 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_7 | 884777 | 886255 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_13 | 26007 | 28613 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_5 | 129429 | 130739 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 91 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_7 | 1270164 | 1270712 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_13 | 14773 | 15603 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_13 | 16235 | 17029 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_7 | 705426 | 705923 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_7 | 217204 | 218490 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_13 | 10695 | 11440 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_7 | 884777 | 886255 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_13 | 15600 | 16142 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_13 | 26968 | 27999 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_13 | 26007 | 26975 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_13 | 22458 | 23153 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_13 | 23131 | 24285 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_13 | 28005 | 28613 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_13 | 29858 | 30769 | vanYA | 0/0 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_13 | 30922 | 31407 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_5 | 129429 | 130739 | (AGly)aac6-Aph2 | 0/0 | 91 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_7 | 1270164 | 1270712 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_13 | 14691 | 15603 | (AGly)ant6-Ia | 1/4 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_13 | 16235 | 17029 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_13 | 15600 | 16142 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_13 | 26968 | 27999 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_13 | 26007 | 26975 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_13 | 22458 | 23153 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_13 | 23131 | 24285 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_13 | 28005 | 28613 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_13 | 29858 | 30769 | (Gly)vanY-A | 0/0 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_13 | 30922 | 31407 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_13 | 10695 | 11432 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_7 | 884777 | 886255 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_7 | 705426 | 705923 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
80740
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2542396 | 2543892 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1677612 | 1678106 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 30063 | 31790 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 28450 | 29504 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1243800 | 1244954 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 2542396 | 2543892 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2542396 | 2543892 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 2046673 | 2047506 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1677612 | 1678106 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
80797
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2066488 | 2067984 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1188137 | 1188631 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2201420 | 2203147 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2199808 | 2200861 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 737119 | 738273 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 2066488 | 2067984 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2066488 | 2067984 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1516923 | 1517756 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1188137 | 1188631 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
80798
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 1723 | 3162 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_12 | 37805 | 38713 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_12 | 36379 | 37173 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 35434 | 36044 | cat(pC221)_1 | 0/0 | 94 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_12 | 41972 | 42734 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 2419633 | 2421129 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_4 | 260582 | 262501 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_4 | 2587983 | 2589902 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 26430 | 29036 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
| contig_12 | 18801 | 21407 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 1723 | 3162 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_12 | 37805 | 38635 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_12 | 36379 | 37173 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_4 | 1343493 | 1343987 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_4 | 1574945 | 1575439 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_4 | 2373116 | 2373610 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_4 | 243142 | 244869 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_4 | 245428 | 246481 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_4 | 818065 | 819219 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 35434 | 36044 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 94 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_12 | 41964 | 42709 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 2419633 | 2421129 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_12 | 37266 | 37808 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_4 | 260582 | 262501 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_4 | 2587983 | 2589902 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 27391 | 28422 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_12 | 19762 | 20793 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_1 | 26430 | 27398 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_12 | 18801 | 19769 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_1 | 24388 | 25083 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_12 | 16759 | 17454 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 25061 | 26215 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_12 | 17432 | 18586 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 28428 | 29036 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_12 | 20799 | 21407 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 29464 | 30374 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_12 | 21835 | 22745 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 30527 | 31012 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
| contig_12 | 22898 | 23383 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 1723 | 3162 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_12 | 37805 | 38713 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_12 | 36379 | 37173 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_12 | 37266 | 37808 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_1 | 27391 | 28422 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_12 | 19762 | 20793 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_1 | 26430 | 27398 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_12 | 18801 | 19769 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_1 | 24388 | 25083 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_12 | 16759 | 17454 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_1 | 25061 | 26215 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_12 | 17432 | 18586 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_1 | 28428 | 29036 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_12 | 20799 | 21407 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_1 | 29464 | 30374 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_12 | 21835 | 22745 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_1 | 30527 | 31012 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_12 | 22898 | 23383 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_12 | 41972 | 42709 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 2419633 | 2421129 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_4 | 1711293 | 1712126 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 35434 | 36044 | (Phe)cat-pC221 | 0/0 | 94 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_4 | 260582 | 262501 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_4 | 2587983 | 2589902 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_4 | 1343493 | 1343987 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_4 | 1574945 | 1575439 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_4 | 2373116 | 2373610 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
80829
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2066485 | 2067981 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1188136 | 1188630 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2201417 | 2203144 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2199805 | 2200858 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 737119 | 738273 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 2066485 | 2067981 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2066485 | 2067981 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1516921 | 1517754 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1188136 | 1188630 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
80889
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 344737 | 345285 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_1 | 730929 | 732407 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 344737 | 345285 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_1 | 1360810 | 1362096 | efmA | 0/0 | 100 | 99 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_1 | 730929 | 732407 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 344737 | 345285 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_1 | 730929 | 732407 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
81048
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_15 | 1158 | 2597 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_15 | 4196 | 4990 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_77 | 4971 | 6467 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_15 | 1158 | 2597 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_15 | 2765 | 3564 | aad(6) | 0/0 | 96 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_15 | 4196 | 4990 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_92 | 17815 | 18309 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_37 | 29930 | 31656 | efrA | 1/1 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_37 | 28318 | 29371 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_74 | 14553 | 15707 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_77 | 4971 | 6467 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_15 | 3561 | 4103 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_15 | 1158 | 2597 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_15 | 4196 | 4990 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_15 | 3561 | 4103 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_77 | 4971 | 6467 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_64 | 22494 | 23327 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_92 | 17815 | 18309 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
81314
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1724 | 3163 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_6 | 32829 | 33476 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_6 | 15992 | 16754 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 796858 | 798354 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 627233 | 629152 | tet(M)_1 | 0/0 | 100 | 100 | X92947 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_3 | 6232 | 8838 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
| contig_4 | 47759 | 50365 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1724 | 3163 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_1 | 1797461 | 1797955 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 1564790 | 1565284 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 609935 | 611662 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 612221 | 613274 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2277634 | 2278788 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_6 | 32829 | 33476 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_6 | 15984 | 16729 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 796858 | 798354 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 627233 | 629152 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_3 | 7193 | 8224 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_4 | 48373 | 49404 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_3 | 6232 | 7200 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_4 | 49397 | 50365 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_3 | 4190 | 4885 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 51712 | 52407 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 4863 | 6017 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 50580 | 51734 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 8230 | 8838 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 47759 | 48367 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 9266 | 10176 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 46421 | 47331 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_3 | 10329 | 10814 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
| contig_4 | 45783 | 46268 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1724 | 3163 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_3 | 7193 | 8224 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_4 | 48373 | 49404 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_3 | 6232 | 7200 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_4 | 49397 | 50365 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_3 | 4190 | 4885 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_4 | 51712 | 52407 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_3 | 4863 | 6017 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_4 | 50580 | 51734 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_3 | 8230 | 8838 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_4 | 47759 | 48367 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_3 | 9266 | 10176 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_4 | 46421 | 47331 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_3 | 10329 | 10814 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_4 | 45783 | 46268 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_6 | 15992 | 16729 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 796858 | 798354 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1429156 | 1429989 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_6 | 32829 | 33476 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 627233 | 629152 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1797461 | 1797955 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 1564790 | 1565284 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
81378
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1267310 | 1267858 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_2 | 1410 | 2318 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_2 | 2950 | 3744 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_1 | 867594 | 868091 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_2 | 37283 | 38045 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1655726 | 1657204 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 8581 | 10521 | tet(S)_3 | 0/0 | 100 | 100 | X92946 | tet(S) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1267310 | 1267858 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_2 | 1488 | 2318 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_2 | 2950 | 3744 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 867594 | 868091 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_1 | 2345659 | 2346945 | efmA | 0/0 | 100 | 99 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_2 | 37308 | 38053 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 1655726 | 1657204 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 2315 | 2857 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_2 | 8596 | 10521 | tetS | 0/0 | 100 | 100 | L09756:0-1926 | Tet(S) is a ribosomal protection protein found in Gram-positive and Gram-negative strains. It is similar to tet(M) and tet(O). | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1267310 | 1267858 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_2 | 1410 | 2318 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_2 | 2950 | 3744 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 2315 | 2857 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_2 | 37308 | 38045 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1655726 | 1657204 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_2 | 8596 | 10521 | (Tet)tetS | 0/0 | 100 | 100 | L09756:447-2372 | (Tet)tetS | NA |
| contig_1 | 867594 | 868091 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
81440
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 512665 | 514161 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1403667 | 1404161 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 340420 | 342147 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 342706 | 343759 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1825380 | 1826534 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 512665 | 514161 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 512665 | 514161 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1043162 | 1043995 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1403667 | 1404161 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
81456
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1095479 | 1096918 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_1 | 1093086 | 1093880 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_1 | 1087033 | 1087795 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1097745 | 1098507 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1936671 | 1938167 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 436780 | 438699 | tet(M)_10 | 0/0 | 100 | 100 | EU182585 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1095479 | 1096918 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_1 | 1094512 | 1095311 | aad(6) | 0/0 | 96 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_1 | 1093086 | 1093880 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1002687 | 1003181 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 2069214 | 2070941 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2067602 | 2068655 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 560875 | 562029 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 1087025 | 1087770 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 1097737 | 1098482 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 1936671 | 1938167 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 1093973 | 1094515 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 436780 | 438699 | tetM | 0/0 | 100 | 94 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1095479 | 1096918 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_1 | 1093086 | 1093880 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_1 | 1093973 | 1094515 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_1 | 1087033 | 1087770 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1097745 | 1098482 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1936671 | 1938167 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1362052 | 1362885 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 436780 | 438699 | (Tet)tetM | 0/0 | 100 | 94 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1002687 | 1003181 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
81863
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 81257 | 82696 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_4 | 39463 | 40371 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_4 | 41003 | 41797 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_4 | 31426 | 32073 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_4 | 14652 | 15405 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 35442 | 36204 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 156186 | 157682 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 323181 | 325100 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 640760 | 642679 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 81257 | 82696 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_4 | 39541 | 40371 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_4 | 41003 | 41797 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_2 | 1009216 | 1009710 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 109646 | 110140 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_2 | 1240670 | 1241164 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 340813 | 342540 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 339201 | 340254 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 525172 | 526326 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_4 | 31426 | 32073 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_4 | 14644 | 15389 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 35467 | 36212 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 156186 | 157682 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_4 | 40368 | 40910 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 323181 | 325100 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 640760 | 642679 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 81257 | 82696 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_4 | 39463 | 40371 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_4 | 41003 | 41797 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_4 | 40368 | 40910 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_4 | 14652 | 15389 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 35467 | 36204 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 156186 | 157682 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_2 | 1376972 | 1377805 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_4 | 31426 | 32073 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 323181 | 325100 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 640760 | 642679 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 1009216 | 1009710 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 109646 | 110140 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_2 | 1240670 | 1241164 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
81956
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1954465 | 1955904 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_1 | 1940416 | 1941279 | ant(6)-Ia_2 | 0/0 | 100 | 100 | KF421157 | ant(6)-Ia | Streptomycin |
| contig_1 | 1952072 | 1952866 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_1 | 536666 | 537163 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_1 | 1935352 | 1936114 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1945163 | 1945966 | lnu(B)_2 | 0/0 | 100 | 100 | JQ861959 | lnu(B) | Lincomycin, Clindamycin |
| contig_1 | 2738143 | 2739639 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 1946020 | 1947504 | lsa(E)_1 | 0/0 | 100 | 100 | JX560992 | lsa(E) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M, Tiamulin |
| contig_1 | 1284610 | 1286529 | tet(M)_10 | 0/0 | 100 | 100 | EU182585 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1954465 | 1955904 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_1 | 1953498 | 1954297 | aad(6) | 0/0 | 96 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_1 | 1940416 | 1941279 | ANT(6)-Ia | 0/0 | 100 | 100 | KF648874.1:61860-60996 | ANT(6)-Ia is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and chromosomes in Staphylococcus epidermidis E. faecium Streptococcus suis S. aureus E. faecalis and Streptococcus mitis | aminoglycoside |
| contig_1 | 1952072 | 1952866 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1852218 | 1852712 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 536666 | 537163 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_1 | 2868968 | 2870695 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2867356 | 2868409 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 1408706 | 1409860 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 1935344 | 1936089 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 2738143 | 2739639 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 1945163 | 1945966 | lsaE | 0/0 | 100 | 100 | AF408195.1:9446-10250 | lsaE is an ABC-F subfamily protein found in porcine MRSA isolates. It confers resistance to pleuromutilin lincosamide and streptogramin A | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 1952959 | 1953501 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 1284610 | 1286529 | tetM | 0/0 | 100 | 94 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1954465 | 1955904 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_1 | 1952072 | 1952866 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_1 | 1952959 | 1953501 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_1 | 1949571 | 1950380 | (AGly)spw | 0/0 | 100 | 100 | NG_048075:101-910 | (AGly)spw | NA |
| contig_1 | 1935352 | 1936089 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1945163 | 1945966 | (MLS)lnu((B) | 0/0 | 100 | 100 | KC688833:1-804 | (MLS)lnu((B) | NA |
| contig_1 | 2738143 | 2739639 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 2160761 | 2161594 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 1284610 | 1286529 | (Tet)tetM | 0/0 | 100 | 94 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 1852218 | 1852712 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 536666 | 537163 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
81958
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_15 | 59928 | 61238 | aac(6’)-aph(2’’)_1 | 0/0 | 91 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_7 | 1437843 | 1438391 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_41 | 10195 | 11107 | ant(6)-Ia_1 | 1/4 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_30 | 484 | 1278 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_41 | 8769 | 9563 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_7 | 724714 | 725211 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_41 | 14366 | 15128 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 468309 | 469805 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_7 | 992109 | 993587 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_41 | 26641 | 29247 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_15 | 59928 | 61238 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 91 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_7 | 1437843 | 1438391 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_41 | 10195 | 11025 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_30 | 484 | 1278 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_41 | 8769 | 9563 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_7 | 724714 | 725211 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_7 | 241099 | 242385 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_4 | 337254 | 338981 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_4 | 339540 | 340593 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_41 | 14358 | 15103 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 468309 | 469805 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_7 | 992109 | 993587 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_30 | 1371 | 1914 | SAT-4 | 1/1 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_41 | 9656 | 10198 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_41 | 27255 | 28286 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_41 | 28279 | 29247 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_41 | 2649 | 3344 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_41 | 1517 | 2671 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_41 | 26641 | 27249 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_15 | 59928 | 61238 | (AGly)aac6-Aph2 | 0/0 | 91 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_7 | 1437843 | 1438391 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_41 | 10195 | 11107 | (AGly)ant6-Ia | 1/4 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_30 | 484 | 1278 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_41 | 8769 | 9563 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_30 | 1371 | 1914 | (AGly)sat4A | 1/1 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_41 | 9656 | 10198 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_41 | 27255 | 28286 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_41 | 28279 | 29247 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_41 | 2649 | 3344 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_41 | 1517 | 2671 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_41 | 26641 | 27249 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_41 | 14366 | 15103 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 468309 | 469805 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_7 | 992109 | 993587 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_7 | 724714 | 725211 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
81973
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1489131 | 1490570 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_5 | 35968 | 37407 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_7 | 42613 | 43521 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_7 | 44153 | 44947 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_6 | 2590 | 3352 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 2586436 | 2587932 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_2 | 2025391 | 2027310 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1489131 | 1490570 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_5 | 35968 | 37407 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_7 | 42691 | 43521 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_7 | 44153 | 44947 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_2 | 486134 | 486628 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_2 | 2416705 | 2418432 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 2418991 | 2420044 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 1007557 | 1008711 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_6 | 2582 | 3327 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 2586436 | 2587932 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_7 | 43518 | 44060 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_2 | 2025391 | 2027310 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1489131 | 1490570 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_5 | 35968 | 37407 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_7 | 42613 | 43521 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_7 | 44153 | 44947 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_7 | 43518 | 44060 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_6 | 2590 | 3327 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 2586436 | 2587932 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_2 | 169451 | 170284 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_2 | 2025391 | 2027310 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 486134 | 486628 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
82126
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_10 | 59962 | 61272 | aac(6’)-aph(2’’)_1 | 0/0 | 91 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_5 | 411010 | 411558 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_16 | 10844 | 11756 | ant(6)-Ia_1 | 1/4 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_16 | 12388 | 13182 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_5 | 2590616 | 2591113 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_16 | 6823 | 7585 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_5 | 2855457 | 2856935 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_16 | 23223 | 25829 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_10 | 59962 | 61272 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 91 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_5 | 411010 | 411558 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_16 | 10926 | 11756 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_16 | 12388 | 13182 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_5 | 2590616 | 2591113 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_5 | 2103124 | 2104410 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_16 | 6848 | 7593 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_5 | 2855457 | 2856935 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_16 | 11753 | 12295 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_16 | 24184 | 25215 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_16 | 23223 | 24191 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_16 | 18609 | 19304 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 19282 | 20436 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 25221 | 25829 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 26999 | 27910 | vanYA | 0/0 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_16 | 28063 | 28548 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_10 | 59962 | 61272 | (AGly)aac6-Aph2 | 0/0 | 91 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_5 | 411010 | 411558 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_16 | 10844 | 11756 | (AGly)ant6-Ia | 1/4 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_16 | 12388 | 13182 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_16 | 11753 | 12295 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_16 | 24184 | 25215 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_16 | 23223 | 24191 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_16 | 18609 | 19304 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_16 | 19282 | 20436 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_16 | 25221 | 25829 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_16 | 26999 | 27910 | (Gly)vanY-A | 0/0 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_16 | 28063 | 28548 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_16 | 6848 | 7585 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_5 | 2855457 | 2856935 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_5 | 2590616 | 2591113 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
82128
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 33052 | 33699 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_3 | 16018 | 16780 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 2328631 | 2330127 | lsa(A)_1 | 0/0 | 100 | 98 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_2 | 2497832 | 2499751 | tet(M)_1 | 0/0 | 100 | 100 | X92947 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 11242 | 13848 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 1326822 | 1327316 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_2 | 1559493 | 1559987 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_2 | 2515322 | 2517049 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 2513710 | 2514763 | efrB | 6/6 | 97 | 97 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 845990 | 847144 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 33052 | 33699 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_3 | 16010 | 16755 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 2328631 | 2330127 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 2497832 | 2499751 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 12203 | 13234 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_1 | 11242 | 12210 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_1 | 9200 | 9895 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 9873 | 11027 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 13240 | 13848 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 14276 | 15186 | vanYA | 1/1 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_1 | 15339 | 15824 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 12203 | 13234 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_1 | 11242 | 12210 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_1 | 9200 | 9895 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_1 | 9873 | 11027 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_1 | 13240 | 13848 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_1 | 14276 | 15186 | (Gly)vanY-A | 1/1 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_1 | 15339 | 15824 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_3 | 16018 | 16755 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 2328631 | 2330127 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_2 | 1694814 | 1695647 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 33052 | 33699 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_2 | 2497832 | 2499751 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 1326822 | 1327316 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_2 | 1559493 | 1559987 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
82591
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1180906 | 1181640 | erm(G)_1 | 0/0 | 100 | 97 | M15332 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1181889 | 1183332 | msr(D)_3 | 0/0 | 99 | 94 | AF227520 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1192877 | 1194796 | tet(M)_1 | 0/0 | 100 | 100 | X92947 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 1624911 | 1626511 | VanC1XY_1 | 0/0 | 100 | 100 | AF162694 | VanC1XY | Vancomycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1180906 | 1181640 | ErmG | 0/0 | 100 | 96 | L42817:201-936 | ErmG is a rRNA adenine N-6-methyltransferase that protects the ribosome from inactivation due to antibiotic binding. | lincosamide, macrolide, streptogramin |
| contig_1 | 1192877 | 1194796 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 1624911 | 1625942 | vanC | 0/0 | 100 | 100 | AF162694:1410-2442 | VanC is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Ser an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It is specific to Enterococcus gallinarum and E. casseliflavus providing intrinsic resistance. | glycopeptide |
| contig_1 | 1628693 | 1629388 | vanRC | 0/0 | 100 | 100 | AF162694:5192-5888 | vanRC is a vanR variant found in the vanC gene cluster | glycopeptide |
| contig_1 | 1629378 | 1630461 | vanSC | 0/0 | 100 | 100 | AF162694:5877-6963 | vanSC is a vanS variant found in the vanC gene cluster | glycopeptide |
| contig_1 | 1626508 | 1628604 | vanTC | 0/0 | 100 | 100 | AF162694:3007-5104 | vanTC is a vanT variant found in the vanC gene cluster | glycopeptide |
| contig_1 | 1625939 | 1626511 | vanXYC | 0/0 | 100 | 100 | AF162694:2438-3011 | vanXYC is a vanXY variant found in the vanC gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1624911 | 1625942 | (Gly)vanC | 0/0 | 100 | 100 | AF162694:1411-2442 | (Gly)vanC | NA |
| contig_1 | 1628693 | 1629388 | (Gly)vanR-C | 0/0 | 100 | 100 | AF162694:5193-5888 | (Gly)vanR-C | NA |
| contig_1 | 1629378 | 1630461 | (Gly)vanS-C | 0/0 | 100 | 99 | DQ022190:4672-5757 | (Gly)vanS-C | NA |
| contig_1 | 1626508 | 1628604 | (Gly)vanT | 0/0 | 100 | 100 | AF162694:3008-5104 | (Gly)vanT | NA |
| contig_1 | 1625939 | 1626511 | (Gly)vanX-Yc | 0/0 | 100 | 100 | DQ022190:1233-1805 | (Gly)vanX-Yc | NA |
| contig_1 | 1180906 | 1181640 | (MLS)erm(G) | 0/0 | 100 | 97 | M15332:672-1406 | (MLS)erm(G) | NA |
| contig_1 | 1181889 | 1183332 | (MLS)msr(D) | 0/0 | 99 | 94 | AF274302:2462-3925 | (MLS)msr(D) | NA |
| contig_1 | 1192877 | 1194796 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
82961
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 85146 | 86456 | aac(6’)-aph(2’’)_1 | 0/0 | 91 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_4 | 1374529 | 1375077 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_14 | 31255 | 32167 | ant(6)-Ia_1 | 1/4 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_14 | 32799 | 33593 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_4 | 2048788 | 2049285 | dfrG_1 | 0/0 | 100 | 100 | AB205645 | dfrG | Trimethoprim |
| contig_14 | 25712 | 26474 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 1813796 | 1815274 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_14 | 1706 | 4312 | VanHAX_2 | 0/0 | 100 | 100 | M97297 | VanHAX | Vancomycin, Teicoplanin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 85146 | 86456 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 91 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_4 | 1374529 | 1375077 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_14 | 31337 | 32167 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_14 | 32799 | 33593 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_4 | 2048788 | 2049285 | dfrG | 0/0 | 100 | 100 | AB205645:1012-1510 | dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus | diaminopyrimidine |
| contig_4 | 2538055 | 2539341 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_14 | 25737 | 26482 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 1813796 | 1815274 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_14 | 32164 | 32706 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_14 | 2667 | 3698 | vanA | 0/0 | 100 | 100 | M97297:6979-8010 | VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. | glycopeptide |
| contig_14 | 1706 | 2674 | vanHA | 0/0 | 100 | 100 | M97297:6018-6986 | vanHA also known as vanH is a vanH variant in the vanA gene cluster | glycopeptide |
| contig_14 | 39018 | 39713 | vanRA | 0/0 | 100 | 100 | M97297:3976-4671 | vanRA also known as vanR is a vanR variant found in the vanA gene cluster | glycopeptide |
| contig_14 | 39691 | 40845 | vanSA | 0/0 | 100 | 100 | M97297:4649-5803 | vanSA also known as vanS is a vanS variant found in the vanA gene cluster | glycopeptide |
| contig_14 | 3704 | 4312 | vanXA | 0/0 | 100 | 100 | M97297:8016-8624 | vanXA also known as vanX is a vanX variant found in the vanA gene cluster | glycopeptide |
| contig_14 | 5482 | 6393 | vanYA | 0/0 | 100 | 100 | M97297:9052-9963 | vanYA also known as vanY is a vanY variant found in the vanA gene cluster | glycopeptide |
| contig_14 | 6546 | 7031 | vanZA | 0/0 | 100 | 100 | M97297:10116-10601 | vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 85146 | 86456 | (AGly)aac6-Aph2 | 0/0 | 91 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_4 | 1374529 | 1375077 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_14 | 31255 | 32167 | (AGly)ant6-Ia | 1/4 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_14 | 32799 | 33593 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_14 | 32164 | 32706 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_14 | 2667 | 3698 | (Gly)vanA-A | 0/0 | 100 | 100 | M97297:6979-8010 | (Gly)vanA-A | NA |
| contig_14 | 1706 | 2674 | (Gly)vanH-A | 0/0 | 100 | 100 | FJ866609:3762-4730 | (Gly)vanH-A | NA |
| contig_14 | 39018 | 39713 | (Gly)vanR-A | 0/0 | 100 | 100 | M97297:3976-4671 | (Gly)vanR-A | NA |
| contig_14 | 39691 | 40845 | (Gly)vanS-A | 0/0 | 100 | 100 | M97297:4649-5803 | (Gly)vanS-A | NA |
| contig_14 | 3704 | 4312 | (Gly)vanX-A | 0/0 | 100 | 100 | M97297:8016-8624 | (Gly)vanX-A | NA |
| contig_14 | 5482 | 6393 | (Gly)vanY-A | 0/0 | 100 | 100 | M97297:9052-9963 | (Gly)vanY-A | NA |
| contig_14 | 6546 | 7031 | (Gly)vanZ-A | 0/0 | 100 | 100 | M97297:10116-10601 | (Gly)vanZ-A | NA |
| contig_14 | 25737 | 26474 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 1813796 | 1815274 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
| contig_4 | 2048788 | 2049285 | (Tmt)dfrG | 0/0 | 100 | 100 | AB205645:1013-1510 | (Tmt)dfrG | NA |
84170
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1404 | 2843 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_2 | 4415 | 5323 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_2 | 2989 | 3783 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 11876 | 12523 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_2 | 8582 | 9344 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 7745 | 8507 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1148772 | 1150268 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 125584 | 127503 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 438982 | 440901 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1404 | 2843 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_2 | 4415 | 5245 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_2 | 2989 | 3783 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 2215157 | 2215651 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 1982372 | 1982866 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 143216 | 144943 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 141604 | 142657 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2701208 | 2702362 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_3 | 11876 | 12523 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_2 | 8574 | 9319 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 7737 | 8482 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 1148772 | 1150268 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 3876 | 4418 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 125584 | 127503 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 438982 | 440901 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1404 | 2843 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_2 | 4415 | 5323 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_2 | 2989 | 3783 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 3876 | 4418 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_2 | 8582 | 9319 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 7745 | 8482 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1148772 | 1150268 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1848890 | 1849723 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_3 | 11876 | 12523 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 125584 | 127503 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 438982 | 440901 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2215157 | 2215651 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 1982372 | 1982866 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
85134
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1404 | 2843 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_3 | 63217 | 64125 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_3 | 61791 | 62585 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_6 | 4203 | 4850 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_3 | 73 | 835 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_6 | 72 | 834 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 1147374 | 1148870 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 125584 | 127503 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_1 | 439156 | 441075 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1404 | 2843 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_3 | 63217 | 64047 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_3 | 61791 | 62585 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 2228211 | 2228705 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 1995427 | 1995921 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_1 | 143216 | 144943 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 141604 | 142657 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2714260 | 2715414 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_6 | 4203 | 4850 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_3 | 65 | 810 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_6 | 64 | 809 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 1147374 | 1148870 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 62678 | 63220 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 125584 | 127503 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_1 | 439156 | 441075 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 1404 | 2843 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_3 | 63217 | 64125 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_3 | 61791 | 62585 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_3 | 62678 | 63220 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_3 | 73 | 810 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_6 | 72 | 809 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 1147374 | 1148870 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 1860614 | 1861447 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_6 | 4203 | 4850 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 125584 | 127503 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 439156 | 441075 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2228211 | 2228705 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_1 | 1995427 | 1995921 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
85160
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 991879 | 993318 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_4 | 24467 | 25375 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_4 | 26007 | 26801 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_5 | 10181 | 10828 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_4 | 20446 | 21208 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_5 | 14197 | 14959 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_2 | 3002411 | 3003907 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_2 | 553630 | 555549 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_2 | 867219 | 869138 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 991879 | 993318 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_4 | 24545 | 25375 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_4 | 26007 | 26801 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_2 | 1922577 | 1923071 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_2 | 2155361 | 2155855 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_2 | 849779 | 851506 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 852065 | 853118 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_2 | 1435847 | 1437001 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_5 | 10181 | 10828 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_4 | 20471 | 21216 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_5 | 14222 | 14967 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_2 | 3002411 | 3003907 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_4 | 25372 | 25914 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_2 | 553630 | 555549 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_2 | 867219 | 869138 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 991879 | 993318 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_4 | 24467 | 25375 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_4 | 26007 | 26801 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_4 | 25372 | 25914 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_4 | 20471 | 21208 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_5 | 14222 | 14959 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_2 | 3002411 | 3003907 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_2 | 2289836 | 2290669 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_5 | 10181 | 10828 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_2 | 553630 | 555549 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 867219 | 869138 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_2 | 1922577 | 1923071 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_2 | 2155361 | 2155855 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
85712
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 8210 | 9118 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_2 | 9750 | 10544 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_2 | 13691 | 14453 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 649597 | 651093 | lsa(A)_1 | 0/0 | 100 | 99 | AY225127 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_1 | 828516 | 830435 | tet(M)_2 | 0/0 | 100 | 98 | X90939 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 8288 | 9118 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_2 | 9750 | 10544 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 2617943 | 2618437 | dfrE | 0/0 | 100 | 98 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_1 | 784811 | 786538 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 783199 | 784252 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_1 | 2167152 | 2168306 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_2 | 13716 | 14461 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 649597 | 651093 | lsaA | 0/0 | 100 | 99 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_2 | 9115 | 9657 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_1 | 828516 | 830435 | tetM | 0/0 | 100 | 98 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 8210 | 9118 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_2 | 9750 | 10544 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_2 | 9115 | 9657 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_2 | 13716 | 14453 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 649597 | 651093 | (MLS)lsa(A) | 0/0 | 100 | 99 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_1 | 86378 | 87211 | (MLS)mph(D) | 0/0 | 100 | 100 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 828516 | 830435 | (Tet)tetM | 0/0 | 100 | 98 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_1 | 2617943 | 2618437 | (Tmt)dfrE | 0/0 | 100 | 98 | NG_055770:101-595 | (Tmt)dfrE | NA |
86253
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 514472 | 515020 | aac(6’)-Ii_1 | 0/0 | 100 | 100 | L12710 | aac(6’)-Ii | Amikacin, Tobramycin |
| contig_3 | 61879 | 62787 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_3 | 51563 | 52468 | aph(2’’)-Id_1 | 0/0 | 100 | 100 | AF016483 | aph(2’’)-Id | Amikacin, Gentamicin, Tobramycin |
| contig_3 | 63419 | 64213 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_3 | 64938 | 65700 | erm(B)_18 | 1/1 | 100 | 100 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 57568 | 58371 | lnu(B)_2 | 0/0 | 100 | 100 | JQ861959 | lnu(B) | Lincomycin, Clindamycin |
| contig_3 | 56030 | 57514 | lsa(E)_1 | 0/0 | 100 | 100 | JX560992 | lsa(E) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M, Tiamulin |
| contig_1 | 944743 | 946221 | msr(C)_1 | 0/0 | 100 | 99 | AY004350 | msr(C) | Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 514472 | 515020 | AAC(6’)-Ii | 0/0 | 100 | 100 | L12710:0-549 | AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. | aminoglycoside |
| contig_3 | 61957 | 62787 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_3 | 51563 | 52468 | APH(2’’)-IVa | 0/0 | 100 | 100 | AF016483:0-906 | APH(2’’)-IVa is a chromosomal-encoded aminoglycoside phosphotransferase in E. casseliflavus | aminoglycoside |
| contig_3 | 63419 | 64213 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_1 | 1592785 | 1594071 | efmA | 0/0 | 100 | 100 | AB467372.1:284-1571 | efmA is an MFS transporter permease in E. faecium. | fluoroquinolone, macrolide |
| contig_3 | 64963 | 65708 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 57568 | 58371 | lsaE | 0/0 | 100 | 100 | AF408195.1:9446-10250 | lsaE is an ABC-F subfamily protein found in porcine MRSA isolates. It confers resistance to pleuromutilin lincosamide and streptogramin A | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_1 | 944743 | 946221 | msrC | 0/0 | 100 | 94 | AF313494:0-1479 | msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_3 | 62784 | 63326 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 514472 | 515020 | (AGly)aac6-Ii | 0/0 | 100 | 100 | L12710:169-717 | (AGly)aac6-Ii | NA |
| contig_3 | 61879 | 62787 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_3 | 51563 | 52468 | (AGly)aph(2’’)-Id | 0/0 | 100 | 100 | AF016483:131-1036 | (AGly)aph(2’’)-Id | NA |
| contig_3 | 63419 | 64213 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_3 | 62784 | 63326 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_3 | 64963 | 65700 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 57568 | 58371 | (MLS)lnu((B) | 0/0 | 100 | 100 | KC688833:1-804 | (MLS)lnu((B) | NA |
| contig_1 | 944743 | 946221 | (MLS)msr(C) | 0/0 | 100 | 99 | AY004350:496-1974 | (MLS)msr(C) | NA |
86535
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 113705 | 115144 | aac(6’)-aph(2’’)_1 | 0/0 | 100 | 100 | M13771 | aac(6’)-aph(2’’) | Amikacin, Gentamicin, Tobramycin |
| contig_4 | 20182 | 21090 | ant(6)-Ia_1 | 0/0 | 100 | 100 | AF330699 | ant(6)-Ia | Streptomycin |
| contig_4 | 21722 | 22516 | aph(3’)-III_1 | 0/0 | 100 | 100 | M26832 | aph(3’)-III | Amikacin |
| contig_1 | 4202 | 4849 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_1 | 22622 | 23269 | cat(pC221)_1 | 0/0 | 100 | 98 | X02529 | cat(pC221) | Chloramphenicol |
| contig_1 | 73 | 826 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_1 | 18493 | 19246 | erm(B)_18 | 0/0 | 99 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_4 | 16161 | 16923 | erm(B)_18 | 1/1 | 100 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_3 | 2211354 | 2212850 | lsa(A)_3 | 0/0 | 100 | 99 | AY737526 | lsa(A) | Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M |
| contig_3 | 2379680 | 2381599 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
| contig_3 | 2689923 | 2691842 | tet(M)_13 | 0/0 | 100 | 100 | AM990992 | tet(M) | Doxycycline, Tetracycline, Minocycline |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 113705 | 115144 | AAC(6’)-Ie-APH(2’’)-Ia | 0/0 | 100 | 100 | GU565967.1:26419-24979 | AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri | aminoglycoside |
| contig_4 | 20260 | 21090 | aad(6) | 0/0 | 100 | 100 | AY712687:0-831 | aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis | aminoglycoside |
| contig_4 | 21722 | 22516 | APH(3’)-IIIa | 0/0 | 100 | 100 | CP004067:52914-53709 | APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | aminoglycoside |
| contig_3 | 1083718 | 1084212 | dfrE | 0/0 | 100 | 97 | AIIS01000002.1:234307-233812 | dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis | diaminopyrimidine |
| contig_3 | 1316510 | 1317004 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_3 | 2125317 | 2125811 | dfrF | 0/0 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_3 | 2397314 | 2399041 | efrA | 0/0 | 100 | 99 | NZ_PTWF01000025.1:35858-37586 | efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_3 | 2395702 | 2396755 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_5 | 82 | 1135 | efrB | 6/6 | 97 | 98 | HG970103.1:0-1086 | efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. | fluoroquinolone, macrolide, rifamycin |
| contig_3 | 598340 | 599494 | emeA | 1/27 | 98 | 97 | AB091338:173-1355 | A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. | acridine_dye |
| contig_1 | 4202 | 4849 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_1 | 22622 | 23269 | Enterococcus_faecalis_chloramphenicol_acetyltransferase | 0/0 | 100 | 100 | X92945.2:9582-8934 | A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis | phenicol |
| contig_1 | 65 | 810 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_1 | 18485 | 19230 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_4 | 16186 | 16931 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_3 | 2211354 | 2212850 | lsaA | 0/0 | 100 | 98 | AY225127.1:40-1537 | LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| contig_4 | 21087 | 21629 | SAT-4 | 0/0 | 100 | 100 | U01945:373-916 | SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. | nucleoside |
| contig_3 | 2379680 | 2381599 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
| contig_3 | 2689923 | 2691842 | tetM | 0/0 | 100 | 100 | AM990992.1:1003680-1001760 | TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. | tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 113705 | 115144 | (AGly)aac6-Aph2 | 0/0 | 100 | 100 | M13771:304-1743 | (AGly)aac6-Aph2 | NA |
| contig_4 | 20182 | 21090 | (AGly)ant6-Ia | 0/0 | 100 | 100 | AF330699:22-930 | (AGly)ant6-Ia | NA |
| contig_4 | 21722 | 22516 | (AGly)aph(3’’)-III | 0/0 | 100 | 100 | V01547:535-1329 | (AGly)aph(3’’)-III | NA |
| contig_4 | 21087 | 21629 | (AGly)sat4A | 0/0 | 100 | 100 | X92945:38870-39412 | (AGly)sat4A | NA |
| contig_1 | 73 | 810 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_1 | 18493 | 19230 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_4 | 16186 | 16923 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_3 | 2211354 | 2212850 | (MLS)lsa(A) | 0/0 | 100 | 98 | AY225127:41-1537 | (MLS)lsa(A) | NA |
| contig_3 | 1454145 | 1454978 | (MLS)mph(D) | 0/0 | 100 | 99 | NC_017312:2291580-2292413 | (MLS)mph(D) | NA |
| contig_1 | 4202 | 4849 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_1 | 22622 | 23269 | (Phe)cat-pC221 | 0/0 | 100 | 98 | X02529:2267-2914 | (Phe)cat-pC221 | NA |
| contig_3 | 2379680 | 2381599 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_3 | 2689923 | 2691842 | (Tet)tetM | 0/0 | 100 | 99 | DQ534550:1451-3370 | (Tet)tetM | NA |
| contig_3 | 1083718 | 1084212 | (Tmt)dfrE | 0/0 | 100 | 97 | NG_055770:101-595 | (Tmt)dfrE | NA |
| contig_3 | 1316510 | 1317004 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_3 | 2125317 | 2125811 | (Tmt)dfrF | 0/0 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
barcode17
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 491148 | 492748 | VanC1XY_1 | 0/0 | 100 | 100 | AF162694 | VanC1XY | Vancomycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 491148 | 492179 | vanC | 0/0 | 100 | 100 | AF162694:1410-2442 | VanC is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Ser an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It is specific to Enterococcus gallinarum and E. casseliflavus providing intrinsic resistance. | glycopeptide |
| contig_4 | 494930 | 495625 | vanRC | 0/0 | 100 | 100 | AF162694:5192-5888 | vanRC is a vanR variant found in the vanC gene cluster | glycopeptide |
| contig_4 | 495615 | 496700 | vanSC | 0/0 | 100 | 100 | AF162694:5877-6963 | vanSC is a vanS variant found in the vanC gene cluster | glycopeptide |
| contig_4 | 492745 | 494841 | vanTC | 0/0 | 100 | 100 | AF162694:3007-5104 | vanTC is a vanT variant found in the vanC gene cluster | glycopeptide |
| contig_4 | 492176 | 492748 | vanXYC | 0/0 | 100 | 100 | AF162694:2438-3011 | vanXYC is a vanXY variant found in the vanC gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_4 | 491148 | 492179 | (Gly)vanC | 0/0 | 100 | 100 | AF162694:1411-2442 | (Gly)vanC | NA |
| contig_4 | 494930 | 495625 | (Gly)vanR-C | 0/0 | 100 | 100 | AF162694:5193-5888 | (Gly)vanR-C | NA |
| contig_4 | 495615 | 496700 | (Gly)vanS-C | 0/0 | 100 | 99 | DQ022190:4672-5757 | (Gly)vanS-C | NA |
| contig_4 | 492745 | 494841 | (Gly)vanT | 0/0 | 100 | 100 | AF162694:3008-5104 | (Gly)vanT | NA |
| contig_4 | 492176 | 492748 | (Gly)vanX-Yc | 0/0 | 100 | 100 | DQ022190:1233-1805 | (Gly)vanX-Yc | NA |
barcode18
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_8 | 3080767 | 3081516 | erm(B)_18 | 0/0 | 98 | 99 | X66468 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S |
| contig_8 | 3251686 | 3253286 | VanC1XY_1 | 0/0 | 100 | 100 | AF162694 | VanC1XY | Vancomycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_8 | 1144280 | 1144775 | dfrF | 1/1 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_8 | 1800216 | 1800711 | dfrF | 1/1 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_8 | 2199332 | 2199827 | dfrF | 1/1 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_8 | 2430807 | 2431302 | dfrF | 1/1 | 100 | 100 | AF028812:392-887 | dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes | diaminopyrimidine |
| contig_8 | 3080759 | 3081504 | ErmB | 1/1 | 100 | 99 | AF242872.1:2131-2878 | ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. | lincosamide, macrolide, streptogramin |
| contig_8 | 3251686 | 3252717 | vanC | 0/0 | 100 | 100 | AF162694:1410-2442 | VanC is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Ser an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It is specific to Enterococcus gallinarum and E. casseliflavus providing intrinsic resistance. | glycopeptide |
| contig_8 | 3255468 | 3256163 | vanRC | 0/0 | 100 | 100 | AF162694:5192-5888 | vanRC is a vanR variant found in the vanC gene cluster | glycopeptide |
| contig_8 | 3256153 | 3257238 | vanSC | 0/0 | 100 | 100 | AF162694:5877-6963 | vanSC is a vanS variant found in the vanC gene cluster | glycopeptide |
| contig_8 | 3253283 | 3255379 | vanTC | 0/0 | 100 | 100 | AF162694:3007-5104 | vanTC is a vanT variant found in the vanC gene cluster | glycopeptide |
| contig_8 | 3252714 | 3253286 | vanXYC | 0/0 | 100 | 100 | AF162694:2438-3011 | vanXYC is a vanXY variant found in the vanC gene cluster | glycopeptide |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_8 | 3251686 | 3252717 | (Gly)vanC | 0/0 | 100 | 100 | AF162694:1411-2442 | (Gly)vanC | NA |
| contig_8 | 3255468 | 3256163 | (Gly)vanR-C | 0/0 | 100 | 100 | AF162694:5193-5888 | (Gly)vanR-C | NA |
| contig_8 | 3256153 | 3257238 | (Gly)vanS-C | 0/0 | 100 | 99 | DQ022190:4672-5757 | (Gly)vanS-C | NA |
| contig_8 | 3253283 | 3255379 | (Gly)vanT | 0/0 | 100 | 100 | AF162694:3008-5104 | (Gly)vanT | NA |
| contig_8 | 3252714 | 3253286 | (Gly)vanX-Yc | 0/0 | 100 | 100 | DQ022190:1233-1805 | (Gly)vanX-Yc | NA |
| contig_8 | 3080767 | 3081504 | (MLS)erm(B) | 0/0 | 100 | 100 | M11180:714-1451 | (MLS)erm(B) | NA |
| contig_8 | 1144280 | 1144775 | (Tmt)dfrF | 1/1 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_8 | 1800216 | 1800711 | (Tmt)dfrF | 1/1 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_8 | 2199332 | 2199827 | (Tmt)dfrF | 1/1 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
| contig_8 | 2430807 | 2431302 | (Tmt)dfrF | 1/1 | 100 | 100 | NG_047755:101-595 | (Tmt)dfrF | NA |
barcode19
Resfinder
## [1] "No antimicrobial resitance genes from Resfinder database were found"CARD
## [1] "No antimicrobial resitance genes from CARD database were found"ARG-ANNOT
## [1] "No antimicrobial resitance genes from ARG-ANNOT database were found"Summary figures
Presence/Absence of antimicrobial resistance genes (coverage and identity > 90%) on each sample.
Select the database:
Resfinder
CARD
ARG-ANNOT
Virulence genes
The search of virulence genes was performed by screening the genome against Virulence Factors Data Base (VFDB, L. Chen et al., 2005) by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing TORMES output directory.
| Field | Description |
|---|---|
| Contig | Contig name where the virulence gene was found |
| Start | Start position of the virulence gene within the contig |
| End | End position of the virulence gene within the contig |
| Gene | Virulence gene |
| Gaps | Gaps in subject (genome) and query (virulence gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the virulence gene |
| Product | Virulence gene product |
Select the sample
72855
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_4 | 156550 | 158574 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_2 | 43242 | 44252 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_2 | 1714697 | 1715512 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1715509 | 1716309 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1716782 | 1717951 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1717970 | 1719436 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1719506 | 1722016 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1722040 | 1722891 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1722918 | 1725371 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1725389 | 1725787 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1725846 | 1726985 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1727011 | 1728354 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1728354 | 1729166 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 469030 | 470268 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 470265 | 472409 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 468046 | 469029 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 475688 | 475894 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 472421 | 475402 | cylM | 0/0 | 100 | 99 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 476013 | 476297 | cylR1 | 0/0 | 100 | 99 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 476298 | 476498 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 475463 | 475654 | cylS | 0/0 | 100 | 99 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 145895 | 149206 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_4 | 149210 | 150640 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_4 | 150637 | 152520 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 71341 | 75266 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 509168 | 513087 | EF0485 | 3/4 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 177285 | 180299 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 1214886 | 1219004 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 2040193 | 2041119 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_4 | 865913 | 866644 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_4 | 865096 | 865824 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_4 | 863756 | 865099 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 813771 | 819734 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_2 | 1701958 | 1706913 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_4 | 940468 | 943695 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_4 | 861989 | 863521 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_4 | 861086 | 861940 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_4 | 152614 | 153468 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
72882
## [1] "No virulence genes from VFDB database were found"72927
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 181882 | 185688 | asa1 | 0/0 | 98 | 92 | NP_816972 | (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 932421 | 933431 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 2247365 | 2248180 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2246568 | 2247368 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2049493 | 2052804 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2048061 | 2049489 | ebpB | 1/2 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2046181 | 2048064 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 793532 | 796546 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1203613 | 1204539 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1371841 | 1372572 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1372661 | 1373389 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1373386 | 1374729 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 121823 | 127786 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1374964 | 1376496 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1376545 | 1377399 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2045233 | 2046087 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
73054
## [1] "No virulence genes from VFDB database were found"73201
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 785934 | 786944 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 2109932 | 2110747 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2109135 | 2109935 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 20988 | 22182 | cylA | 0/0 | 96 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 22179 | 24323 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 18892 | 19875 | cylI | 0/0 | 100 | 100 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 27602 | 27808 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 24335 | 27316 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 27927 | 28211 | cylR1 | 0/0 | 100 | 98 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 28212 | 28412 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 27377 | 27568 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 926478 | 929789 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 929793 | 931223 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 931220 | 933103 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 631580 | 634594 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2525029 | 2529147 | EF3023 | 0/0 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1846908 | 1847834 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1595877 | 1596608 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1595060 | 1595788 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1593720 | 1595063 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 141918 | 147881 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1591953 | 1593485 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 54999 | 58585 | prgB/asc10 | 2/2 | 92 | 96 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1591050 | 1591904 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 933197 | 934041 | srtC | 0/0 | 99 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
73338
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2225470 | 2227494 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 2421017 | 2422027 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 894917 | 895732 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 895729 | 896529 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 897002 | 898171 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 898190 | 899656 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 899726 | 902236 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 902260 | 903111 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 903138 | 905591 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 905609 | 906007 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 906066 | 907205 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 907231 | 908574 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 908574 | 909386 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2849568 | 2850806 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2850803 | 2852947 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2848584 | 2849567 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2856226 | 2856432 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2852959 | 2855940 | cylM | 0/0 | 100 | 99 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2856551 | 2856835 | cylR1 | 0/0 | 100 | 99 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2856836 | 2857036 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2856001 | 2856192 | cylS | 0/0 | 100 | 99 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2234838 | 2238149 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2233404 | 2234834 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2231524 | 2233407 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 30200 | 34117 | EF0149 | 0/0 | 100 | 100 | NP_813951 | (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2889734 | 2893653 | EF0485 | 3/4 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 5267 | 9192 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2555060 | 2558074 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 393773 | 397891 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1280965 | 1281891 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1517400 | 1518131 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1518220 | 1518948 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1518945 | 1520288 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 3190465 | 3196428 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 882178 | 887133 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 1440348 | 1443575 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1520523 | 1522055 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1522104 | 1522958 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2230576 | 2231430 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
73611
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 1296563 | 1298728 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_2 | 831114 | 834285 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 736889 | 738871 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_1 | 20231 | 21205 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
74016
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 1777855 | 1780020 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_2 | 1273015 | 1276186 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 1178790 | 1180772 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_2 | 2479016 | 2479990 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
74089
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 20341 | 24231 | asa1 | 0/0 | 100 | 97 | NP_816972 | (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2818462 | 2819472 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1511441 | 1512256 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1512253 | 1513053 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2635236 | 2638547 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2633802 | 2635232 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2631922 | 2633805 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 16588 | 19602 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1785966 | 1786892 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1940011 | 1940739 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1940736 | 1942079 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 716036 | 721999 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1942314 | 1943846 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1943895 | 1944749 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2630974 | 2631828 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
75125
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_3 | 2768712 | 2770877 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_3 | 2304785 | 2307956 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_3 | 2210560 | 2212542 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_3 | 635586 | 636560 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
75176
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1871734 | 1873899 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_1 | 1407808 | 1410979 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1313583 | 1315565 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_1 | 2571112 | 2572086 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
75411
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 446318 | 447328 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1763875 | 1764690 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1763078 | 1763878 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2941086 | 2942324 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2938945 | 2941089 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2942325 | 2943308 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2935460 | 2935666 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2935952 | 2938933 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2935057 | 2935341 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2934856 | 2935056 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2935700 | 2935891 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 606645 | 609956 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 609960 | 611390 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 611387 | 613270 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2551295 | 2555212 | EF0149 | 0/0 | 100 | 100 | NP_813951 | (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2901001 | 2904918 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 63358 | 67283 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2198774 | 2202636 | EF3023 | 0/0 | 94 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1498840 | 1499766 | efaA | 0/0 | 100 | 99 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2599752 | 2605715 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1339204 | 1342431 | fss3 | 0/0 | 100 | 99 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1289080 | 1290612 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1288177 | 1289031 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 613364 | 614208 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
75520
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2290544 | 2292568 | ace | 0/0 | 100 | 97 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 2447152 | 2448162 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1208889 | 1209704 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1209701 | 1210501 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2302799 | 2306110 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2301365 | 2302795 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2299485 | 2301368 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 405 | 4321 | EF0485 | 2/2 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2581544 | 2584558 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1449946 | 1450872 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1606663 | 1607394 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1607483 | 1608211 | fsrB | 0/0 | 100 | 98 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1608208 | 1609551 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1609787 | 1611319 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 108605 | 112497 | prgB/asc10 | 5/32 | 99 | 94 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1611368 | 1612222 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2298537 | 2299391 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
75582
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1691838 | 1693862 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 1846749 | 1847759 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 413799 | 414614 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 414611 | 415411 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 415884 | 417053 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 417072 | 418538 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 418608 | 421118 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 421142 | 421993 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 422020 | 424473 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 424491 | 424889 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 424948 | 426087 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 426113 | 427456 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 427456 | 428268 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1701206 | 1704517 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1699772 | 1701202 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1697892 | 1699775 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2300073 | 2303966 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1980793 | 1983807 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 3032024 | 3036142 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 749778 | 750704 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 983529 | 984260 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 984349 | 985077 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 985074 | 986417 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2610210 | 2616173 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 401060 | 406015 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 906478 | 909705 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 986652 | 988184 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 988233 | 989087 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1696944 | 1697798 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
75715
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 16664 | 20554 | asa1 | 0/0 | 100 | 100 | NP_816972 | (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2020512 | 2021522 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 429899 | 430714 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 429102 | 429902 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 56154 | 57392 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 54013 | 56157 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 57393 | 58376 | cylI | 0/0 | 100 | 100 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 50528 | 50734 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 51020 | 54001 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 50125 | 50409 | cylR1 | 0/0 | 100 | 98 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 49924 | 50124 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 50768 | 50959 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2162229 | 2165540 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2165544 | 2166974 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2166971 | 2168854 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1884921 | 1887935 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 155260 | 156186 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2861562 | 2862290 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2860222 | 2861565 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1220161 | 1226124 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 2858455 | 2859987 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 2857552 | 2858406 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2168948 | 2169802 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
75746
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_9 | 1227240 | 1229405 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_9 | 1690160 | 1693331 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_9 | 1785574 | 1787556 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_9 | 521116 | 522090 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
75840
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 534443 | 536467 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 339909 | 340919 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1836256 | 1837071 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1835459 | 1836259 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1833817 | 1834986 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1832332 | 1833798 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1829752 | 1832262 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1828877 | 1829728 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1826397 | 1828850 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1825981 | 1826379 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1824783 | 1825922 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1823414 | 1824757 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1822602 | 1823414 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 3118983 | 3120221 | cylA | 0/0 | 100 | 99 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 3116842 | 3118986 | cylB | 0/0 | 100 | 98 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 3120222 | 3121205 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 3113357 | 3113563 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 3113849 | 3116830 | cylM | 0/0 | 100 | 99 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 3112954 | 3113238 | cylR1 | 0/0 | 100 | 99 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 3112753 | 3112953 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 3113597 | 3113788 | cylS | 0/0 | 100 | 99 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 523788 | 527099 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 527103 | 528533 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 528530 | 530413 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 3076136 | 3080055 | EF0485 | 3/4 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 203862 | 206876 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2350849 | 2354967 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1469037 | 1469963 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1243737 | 1244468 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1242920 | 1243648 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1241580 | 1242923 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2769489 | 2775452 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1844855 | 1849810 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 1316501 | 1319728 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1239813 | 1241345 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1238910 | 1239764 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 530507 | 531361 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
76174
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_7 | 683947 | 686112 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_7 | 1275661 | 1277643 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_7 | 2655457 | 2656431 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
76302
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1957623 | 1958633 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 578909 | 579724 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 579721 | 580521 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 580994 | 582162 | cpsC | 0/0 | 100 | 99 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 583250 | 584716 | cpsD | 0/0 | 100 | 99 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 584786 | 587296 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 587320 | 588171 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 588198 | 590651 | cpsG | 0/0 | 100 | 99 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 590669 | 591067 | cpsH | 0/0 | 100 | 99 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 591126 | 592265 | cpsI | 0/0 | 100 | 99 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 592291 | 593634 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 593634 | 594446 | cpsK | 0/0 | 100 | 99 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1809484 | 1812795 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1808050 | 1809480 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1806170 | 1808053 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2093402 | 2096416 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 894616 | 895542 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1093203 | 1093934 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1094023 | 1094751 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1094748 | 1096091 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2620474 | 2626437 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 566171 | 571126 | fss2 | 0/0 | 100 | 98 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 1096326 | 1097858 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1097907 | 1098761 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1805232 | 1806076 | srtC | 0/0 | 99 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
76304
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2557414 | 2558424 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1245185 | 1246000 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1245997 | 1246797 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2371595 | 2374906 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2370161 | 2371591 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2368281 | 2370164 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2691003 | 2694017 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1519712 | 1520638 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1675282 | 1676010 | fsrB | 0/0 | 100 | 98 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1676007 | 1677350 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 448248 | 454211 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1677585 | 1679117 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1679166 | 1680020 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2367333 | 2368187 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
76646
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 144125 | 145135 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1623701 | 1624516 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1624513 | 1625313 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1625786 | 1626955 | cpsC | 0/0 | 100 | 98 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1626974 | 1628440 | cpsD | 0/0 | 100 | 99 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1628510 | 1631020 | cpsE | 0/0 | 100 | 99 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1631044 | 1631895 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1631922 | 1634375 | cpsG | 0/0 | 100 | 99 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1634393 | 1634791 | cpsH | 0/0 | 100 | 99 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1634850 | 1635989 | cpsI | 0/0 | 100 | 99 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1636015 | 1637358 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1637358 | 1638170 | cpsK | 0/0 | 100 | 99 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2738590 | 2741901 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2737156 | 2738586 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2735276 | 2737159 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1179082 | 1182944 | EF3023 | 0/0 | 94 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1905952 | 1906878 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2062130 | 2062861 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2062950 | 2063678 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2063675 | 2065018 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 775855 | 781818 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 2065253 | 2066785 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 42473 | 46390 | prgB/asc10 | 2/2 | 100 | 96 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2066834 | 2067688 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2734338 | 2735182 | srtC | 0/0 | 99 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
76746
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 763238 | 765262 | ace | 0/0 | 100 | 98 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 607431 | 608441 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1883735 | 1884550 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1882938 | 1883738 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 197384 | 198367 | cylI | 2/2 | 100 | 96 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 749995 | 753306 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 753310 | 754740 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 754737 | 756620 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 471503 | 474517 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2341933 | 2346066 | EF3023 | 1/15 | 100 | 98 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1625852 | 1626778 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1431132 | 1431863 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1430315 | 1431043 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1428975 | 1430318 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2741390 | 2747353 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1427208 | 1428740 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1426306 | 1427160 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 756714 | 757558 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
76793
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1249405 | 1251429 | ace | 0/0 | 100 | 97 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 1094533 | 1095543 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 2331244 | 2332059 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2330447 | 2331247 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2328805 | 2329974 | cpsC | 0/0 | 100 | 98 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2327320 | 2328786 | cpsD | 0/0 | 100 | 98 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2324740 | 2327250 | cpsE | 0/0 | 100 | 97 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2322218 | 2324671 | cpsG | 0/0 | 100 | 99 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2321802 | 2322200 | cpsH | 0/0 | 100 | 98 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2320604 | 2321743 | cpsI | 0/0 | 100 | 99 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2319235 | 2320578 | cpsJ | 0/0 | 100 | 99 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2318423 | 2319235 | cpsK | 0/0 | 100 | 99 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1236573 | 1239881 | ebpA | 1/3 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1239885 | 1241315 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1241312 | 1243195 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 958782 | 961796 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 57994 | 62112 | EF3023 | 0/0 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2049946 | 2050872 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1894963 | 1895694 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1894146 | 1894874 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1892806 | 1894149 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 447696 | 453657 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1891039 | 1892571 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1890136 | 1890990 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1243289 | 1244133 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
76952
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 910427 | 911437 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 2256689 | 2257504 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2255892 | 2256692 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2254250 | 2255419 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2252765 | 2254231 | cpsD | 0/0 | 100 | 99 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2250186 | 2252695 | cpsE | 0/0 | 100 | 99 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2247663 | 2250116 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2247247 | 2247645 | cpsH | 0/0 | 100 | 97 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2246050 | 2247188 | cpsI | 1/1 | 100 | 98 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2244681 | 2246024 | cpsJ | 0/0 | 100 | 99 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2243869 | 2244681 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1069583 | 1072894 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1072898 | 1074328 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1074325 | 1076208 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 18462 | 22378 | EF0485 | 2/2 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2676626 | 2680744 | EF3023 | 0/0 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1987393 | 1988319 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 147934 | 153897 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1830517 | 1833744 | fss3 | 0/0 | 100 | 99 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1779387 | 1780919 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1778484 | 1779338 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1076302 | 1077156 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
76967
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_3 | 1630226 | 1632391 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_3 | 2093146 | 2096317 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_3 | 2188560 | 2190542 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_3 | 933930 | 934904 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
76985
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 421065 | 422075 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1729796 | 1730611 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1728999 | 1729799 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 580220 | 583531 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 583535 | 584965 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 584962 | 586845 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2227723 | 2231841 | EF3023 | 0/0 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1495891 | 1496817 | efaA | 0/0 | 100 | 99 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2624276 | 2630239 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1339533 | 1342760 | fss3 | 0/0 | 100 | 99 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1288403 | 1289935 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1287500 | 1288354 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 586939 | 587793 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
77019
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 395297 | 396307 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1775451 | 1776266 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1774654 | 1775454 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 50922 | 52160 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 52157 | 54301 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 49938 | 50921 | cylI | 0/0 | 100 | 100 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 57580 | 57786 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 54313 | 57294 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 57905 | 58189 | cylR1 | 0/0 | 100 | 99 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 58190 | 58390 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 57355 | 57546 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 537745 | 541056 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 541060 | 542490 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 542487 | 544370 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1420910 | 1421836 | efaA | 0/0 | 100 | 99 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2609147 | 2615110 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1263687 | 1266914 | fss3 | 0/0 | 100 | 99 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1212666 | 1214198 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 19206 | 23084 | prgB/asc10 | 15/47 | 99 | 91 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 5264 | 9213 | prgB/asc10 | 14/32 | 100 | 95 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1211763 | 1212617 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 544464 | 545318 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
77340
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_10 | 2392370 | 2394535 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_10 | 1923866 | 1927037 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_10 | 1829642 | 1831624 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_10 | 253187 | 254161 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
77364
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1624101 | 1626125 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 1779012 | 1780022 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 348428 | 349243 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 349240 | 350040 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 350513 | 351682 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 351701 | 353167 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 353237 | 355747 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 355771 | 356622 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 356649 | 359102 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 359120 | 359518 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 359577 | 360716 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 360742 | 362085 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 362085 | 362897 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1633469 | 1636780 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1632035 | 1633465 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1630155 | 1632038 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2235000 | 2238893 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1914388 | 1917402 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2964055 | 2968173 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 684408 | 685334 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 917123 | 917854 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 917943 | 918671 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 918668 | 920011 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2542240 | 2548203 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 335689 | 340644 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 840072 | 843299 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 920246 | 921778 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 921827 | 922681 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1629207 | 1630061 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
77448
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 1444393 | 1446558 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_2 | 975943 | 979114 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 881719 | 883701 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_2 | 2145293 | 2146267 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
77566
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_6 | 117077 | 118087 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_4 | 359067 | 359882 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 359879 | 360679 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 1526461 | 1529772 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_4 | 1525027 | 1526457 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_4 | 1523147 | 1525030 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_9 | 2305 | 6221 | EF0485 | 2/2 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_5 | 43869 | 46883 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_3 | 579731 | 583849 | EF3023 | 0/0 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_4 | 682794 | 683720 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_4 | 847740 | 848471 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_4 | 848560 | 849288 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_4 | 849285 | 850628 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_3 | 179569 | 185532 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_4 | 850863 | 852395 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_4 | 852444 | 853298 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_4 | 1522199 | 1523053 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
77655
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_7 | 41942 | 43966 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_5 | 46256 | 47266 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_2 | 127947 | 128762 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 128759 | 129559 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 130032 | 131201 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 131220 | 132686 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 132756 | 135266 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 135290 | 136141 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 136168 | 138621 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 138639 | 139037 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 139096 | 140235 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 140261 | 141604 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 141604 | 142416 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 182767 | 184005 | cylA | 0/0 | 100 | 99 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 180626 | 182770 | cylB | 0/0 | 100 | 98 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 184006 | 184989 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 177141 | 177347 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 177633 | 180614 | cylM | 0/0 | 100 | 99 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 176738 | 177022 | cylR1 | 0/0 | 100 | 99 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 176537 | 176737 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 177381 | 177572 | cylS | 0/0 | 100 | 99 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_7 | 31287 | 34598 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_7 | 34602 | 36032 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_7 | 36029 | 37912 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_4 | 139920 | 143839 | EF0485 | 3/4 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_5 | 180299 | 183313 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_6 | 127607 | 131725 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 495347 | 496273 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 257384 | 258115 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 256567 | 257295 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 255227 | 256570 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_3 | 137043 | 143006 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_2 | 115208 | 120163 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 331938 | 335165 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 253460 | 254992 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 252557 | 253411 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_7 | 38006 | 38860 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
77771
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 22955 | 26761 | asa1 | 0/0 | 98 | 97 | NP_816972 | (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 722676 | 723686 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_3 | 2047899 | 2048714 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 2047102 | 2047902 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 304487 | 305725 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 302346 | 304490 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 305726 | 306709 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 298861 | 299067 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 299353 | 302334 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 298458 | 298742 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 298257 | 298457 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 299101 | 299292 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 883002 | 886313 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 886317 | 887747 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 887744 | 889627 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 22 | 3947 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 264402 | 268319 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 2560607 | 2564469 | EF3023 | 0/0 | 94 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_3 | 1784571 | 1785497 | efaA | 0/0 | 100 | 99 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_3 | 2945525 | 2951488 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_3 | 1624940 | 1628167 | fss3 | 0/0 | 100 | 99 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_3 | 1574814 | 1576346 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_3 | 1573911 | 1574765 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_3 | 889721 | 890565 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
77804
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 412321 | 413331 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1766831 | 1767646 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1766034 | 1766834 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1764392 | 1765561 | cpsC | 0/0 | 100 | 99 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1762907 | 1764373 | cpsD | 0/0 | 100 | 99 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1760327 | 1762837 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1759452 | 1760303 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1756972 | 1759425 | cpsG | 0/0 | 100 | 99 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1756556 | 1756954 | cpsH | 0/0 | 100 | 99 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1755358 | 1756497 | cpsI | 0/0 | 100 | 99 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1753989 | 1755332 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1753177 | 1753989 | cpsK | 0/0 | 100 | 99 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 556822 | 560133 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 560137 | 561567 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 561564 | 563447 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 274536 | 277550 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1453210 | 1454136 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1287413 | 1288144 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1286596 | 1287324 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1285256 | 1286599 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2574873 | 2580836 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1775429 | 1780384 | fss2 | 0/0 | 100 | 98 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 1283489 | 1285021 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1282586 | 1283440 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 563541 | 564385 | srtC | 0/0 | 99 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
78036
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1369773 | 1371797 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 1180296 | 1181306 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 2549833 | 2550648 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2549036 | 2549836 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 704151 | 705389 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 702010 | 704154 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 705390 | 706373 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 698525 | 698731 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 699017 | 701998 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 698122 | 698406 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 697921 | 698121 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 698765 | 698956 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1359118 | 1362429 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1362433 | 1363863 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1363860 | 1365743 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 664160 | 668077 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 39589 | 43514 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1044358 | 1047372 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2266265 | 2267191 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2074714 | 2075445 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2073897 | 2074625 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2072557 | 2073900 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 345807 | 351770 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 2146542 | 2149769 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 2070790 | 2072322 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 2069887 | 2070741 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1365837 | 1366691 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
78039
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_8 | 1970786 | 1972951 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_8 | 2438851 | 2442022 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_8 | 2534264 | 2536246 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_8 | 1269548 | 1270522 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
78041
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 213556 | 215721 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_2 | 2568055 | 2571226 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 2473831 | 2475813 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_2 | 910285 | 911259 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
78203
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_4 | 436988 | 439153 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_4 | 902953 | 906124 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_4 | 998367 | 1000349 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_4 | 2580919 | 2581893 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
78272
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_14 | 458869 | 459879 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_14 | 1703904 | 1704719 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_14 | 1703107 | 1703907 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_14 | 35804 | 37042 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_14 | 33663 | 35807 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_14 | 37043 | 38026 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_14 | 30178 | 30384 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_14 | 30670 | 33651 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_14 | 29775 | 30059 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_14 | 29574 | 29774 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_14 | 30418 | 30609 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_14 | 602469 | 605780 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_14 | 605784 | 607214 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_14 | 607211 | 609094 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_14 | 2809457 | 2813374 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_7 | 403 | 4328 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_14 | 2157363 | 2161482 | EF3023 | 1/1 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_14 | 1418411 | 1419337 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_14 | 42690 | 48311 | esp | 0/0 | 100 | 100 | AAD09858 | (esp) Enterococcal surface protein; Esp [Esp (VF0353)] [Enterococcus faecalis str. MMH594] |
| contig_14 | 1261621 | 1262352 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_14 | 1260804 | 1261532 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_14 | 1259464 | 1260807 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_14 | 1257697 | 1259229 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_9 | 406 | 4335 | prgB/asc10 | 13/14 | 100 | 94 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_14 | 1256794 | 1257648 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_14 | 609188 | 610042 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
78438
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 469272 | 471437 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_1 | 22121 | 24103 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_1 | 1168086 | 1169060 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
78506
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 2605655 | 2607679 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_2 | 2797931 | 2798941 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_2 | 1328946 | 1329761 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1329758 | 1330558 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1331031 | 1332200 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1332219 | 1333685 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1333755 | 1336265 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1336289 | 1337140 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1337167 | 1339620 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1339638 | 1340036 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1340095 | 1341234 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1341260 | 1342603 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1342603 | 1343415 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2615023 | 2618334 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 2613589 | 2615019 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 2611709 | 2613592 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 55672 | 59565 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 2933307 | 2936321 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 776649 | 780767 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 1664926 | 1665852 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_2 | 1898677 | 1899408 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1899497 | 1900225 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1900222 | 1901565 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 353502 | 359465 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_2 | 1316207 | 1321162 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_2 | 1821626 | 1824853 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 1901800 | 1903332 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 1903381 | 1904235 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_2 | 2610761 | 2611615 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
78507
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1159457 | 1160467 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 2464404 | 2465219 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2463607 | 2464407 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1301173 | 1304484 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1304488 | 1305918 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1305915 | 1307798 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1023853 | 1026867 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 121408 | 125526 | EF3023 | 0/0 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2139182 | 2140108 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1981326 | 1982057 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1980509 | 1981237 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1979169 | 1980512 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 514804 | 520767 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1977402 | 1978934 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1976499 | 1977353 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1307892 | 1308746 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
78555
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_3 | 1788034 | 1790199 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_3 | 1321063 | 1324234 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_3 | 1226838 | 1228820 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_3 | 2527260 | 2528234 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
78894
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 2653180 | 2655345 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_2 | 282543 | 285714 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 377956 | 379938 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_2 | 1951689 | 1952663 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
79576
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 656975 | 658999 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_2 | 467248 | 468258 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_2 | 1914791 | 1915606 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1913994 | 1914794 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 3267007 | 3268245 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 3268246 | 3269229 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 3260049 | 3260255 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 3260541 | 3263522 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 3259646 | 3259930 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 3259445 | 3259645 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 3260289 | 3260480 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 646319 | 649630 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 649634 | 651064 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 651061 | 652944 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 39590 | 43515 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 3222788 | 3226705 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_5 | 48821 | 52737 | EF0485 | 2/2 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 331311 | 334325 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 1594198 | 1595124 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_2 | 1383 | 7004 | esp | 0/0 | 100 | 100 | AAD09858 | (esp) Enterococcal surface protein; Esp [Esp (VF0353)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 1363249 | 1363980 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1362432 | 1363160 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1361092 | 1362435 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 2904343 | 2910306 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_2 | 1435077 | 1438304 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 1359325 | 1360857 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 1358422 | 1359276 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_2 | 653038 | 653892 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
79578
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1792684 | 1794708 | ace | 0/0 | 100 | 96 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 1947626 | 1948636 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 661179 | 661994 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 661991 | 662791 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1805245 | 1808556 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1803811 | 1805241 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1801931 | 1803814 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2081276 | 2084290 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 928081 | 929007 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1123093 | 1123824 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1123913 | 1124641 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1124638 | 1125982 | fsrC | 1/1 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2597254 | 2603217 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1126217 | 1127747 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 48034 | 51951 | prgB/asc10 | 2/2 | 100 | 96 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1127798 | 1128652 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1800993 | 1801837 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
79579
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 619060 | 621084 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 465163 | 466173 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1966113 | 1966928 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1965316 | 1966116 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1963674 | 1964843 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1962189 | 1963655 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1959609 | 1962119 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1958734 | 1959585 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1956254 | 1958707 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1955838 | 1956236 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1954640 | 1955779 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1953271 | 1954614 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1952459 | 1953271 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 36737 | 37975 | cylA | 0/0 | 100 | 99 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 34596 | 36740 | cylB | 0/0 | 100 | 98 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 37976 | 38959 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 31111 | 31317 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 31603 | 34584 | cylM | 0/0 | 100 | 99 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 30708 | 30992 | cylR1 | 0/0 | 100 | 99 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 30507 | 30707 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 31351 | 31542 | cylS | 0/0 | 100 | 99 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 608405 | 611716 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 611720 | 613150 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 613147 | 615030 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 3244333 | 3248252 | EF0485 | 3/4 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 72007 | 75932 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 329116 | 332130 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2481641 | 2485758 | EF3023 | 1/1 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1599964 | 1600890 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1365584 | 1366315 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1364767 | 1365495 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1363427 | 1364770 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2898886 | 2904849 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1974712 | 1979667 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 1442803 | 1446030 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1361660 | 1363192 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1360757 | 1361611 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 615124 | 615978 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
79707
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 493491 | 497382 | asa1 | 1/1 | 100 | 97 | NP_816972 | (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1679439 | 1680449 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 145026 | 145841 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 144229 | 145029 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1846709 | 1850020 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1850024 | 1851454 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1851451 | 1853334 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 536152 | 540045 | EF0485 | 3/30 | 99 | 94 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1213111 | 1216973 | EF3023 | 0/0 | 94 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2710806 | 2711732 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2559616 | 2560347 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2558799 | 2559527 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2557459 | 2558802 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 831251 | 837214 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 2555692 | 2557224 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 2554789 | 2555643 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1853428 | 1854282 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
79867
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2648753 | 2650777 | ace | 0/0 | 100 | 97 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 107895 | 108905 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1542420 | 1543235 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1543232 | 1544032 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1544505 | 1545674 | cpsC | 0/0 | 100 | 97 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1545693 | 1547159 | cpsD | 0/0 | 100 | 99 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1547229 | 1549739 | cpsE | 0/0 | 100 | 98 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1549808 | 1552261 | cpsG | 0/0 | 100 | 99 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1552279 | 1552677 | cpsH | 0/0 | 100 | 98 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1552736 | 1553875 | cpsI | 0/0 | 100 | 99 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1553901 | 1555244 | cpsJ | 0/0 | 100 | 98 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1555244 | 1556056 | cpsK | 0/0 | 100 | 99 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2660299 | 2663610 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2658865 | 2660295 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2656985 | 2658868 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 241655 | 244669 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1125390 | 1129508 | EF3023 | 0/0 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1821195 | 1822121 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2010017 | 2010748 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2010837 | 2011565 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2011562 | 2012905 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2013140 | 2014672 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 2014721 | 2015575 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2656047 | 2656891 | srtC | 0/0 | 99 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80213
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2613726 | 2615750 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 2768636 | 2769646 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1337016 | 1337831 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1337828 | 1338628 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1339101 | 1340270 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1340289 | 1341755 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1341825 | 1344335 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1344359 | 1345210 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1345237 | 1347690 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1347708 | 1348106 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1348165 | 1349304 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1349330 | 1350673 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1350673 | 1351485 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2623094 | 2626405 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2621660 | 2623090 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2619780 | 2621663 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 57003 | 60896 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2902680 | 2905694 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 784695 | 788813 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1672996 | 1673922 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1908079 | 1908810 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1908899 | 1909627 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1909624 | 1910967 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 362911 | 368874 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1324277 | 1329232 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 1829696 | 1832923 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1911202 | 1912734 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1912783 | 1913637 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2618832 | 2619686 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80275
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 19274 | 23080 | asa1 | 0/0 | 98 | 97 | NP_816972 | (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 1693707 | 1694717 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_3 | 415868 | 416683 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 416680 | 417480 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 13233 | 14216 | cylI | 2/2 | 100 | 96 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 1545900 | 1549211 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 1544466 | 1545896 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 1542586 | 1544469 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 2885992 | 2889909 | EF0485 | 0/0 | 100 | 97 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 1833705 | 1836719 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_3 | 678913 | 679839 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_3 | 873752 | 874483 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_3 | 874572 | 875300 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_3 | 875297 | 876640 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_3 | 2605345 | 2611308 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_3 | 876875 | 878407 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 74196 | 78113 | prgB/asc10 | 2/2 | 100 | 96 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 878456 | 879310 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_3 | 1541638 | 1542492 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80343
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 685892 | 687916 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 876382 | 877392 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 2705520 | 2706335 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2706332 | 2707132 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1354406 | 1355644 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1355641 | 1357785 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1353422 | 1354405 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1361064 | 1361270 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1357797 | 1360778 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1361389 | 1361673 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1361674 | 1361874 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1360839 | 1361030 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 695260 | 698571 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 693826 | 695256 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 691946 | 693829 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1394614 | 1398531 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 5268 | 9193 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1010316 | 1013330 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2948083 | 2949009 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1341525 | 1347146 | esp | 0/0 | 100 | 100 | AAD09858 | (esp) Enterococcal surface protein; Esp [Esp (VF0353)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 3139827 | 3140558 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 3140647 | 3141375 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 3141372 | 3142715 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1711011 | 1716974 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 3065503 | 3068730 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 3142950 | 3144482 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 3144531 | 3145385 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 690998 | 691852 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80344
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2249580 | 2251604 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 2017908 | 2018918 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 280893 | 281708 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 280096 | 280896 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 278454 | 279623 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 276969 | 278435 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 274389 | 276899 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 273514 | 274365 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 271034 | 273487 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 270618 | 271016 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 269420 | 270559 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 268051 | 269394 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 267239 | 268051 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1581181 | 1582419 | cylA | 0/0 | 100 | 99 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1579040 | 1581184 | cylB | 0/0 | 100 | 98 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1582420 | 1583403 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1575555 | 1575761 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1576047 | 1579028 | cylM | 0/0 | 100 | 99 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1575152 | 1575436 | cylR1 | 0/0 | 100 | 99 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1574951 | 1575151 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1575795 | 1575986 | cylS | 0/0 | 100 | 99 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2199925 | 2203236 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2203240 | 2204670 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2204667 | 2206550 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1538334 | 1542253 | EF0485 | 3/4 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1881863 | 1884877 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 800601 | 804719 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 3196995 | 3197921 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2958945 | 2959677 | fsrA | 1/1 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2958128 | 2958856 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2956788 | 2958131 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1226657 | 1232620 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 289492 | 294447 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 3034834 | 3038061 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 2955021 | 2956553 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_5 | 44300 | 48226 | prgB/asc10 | 3/11 | 100 | 96 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2954118 | 2954972 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2206644 | 2207498 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80411
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_3 | 2233889 | 2235913 | ace | 0/0 | 100 | 97 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 47494 | 51384 | asa1 | 0/0 | 100 | 96 | NP_816972 | (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 2045337 | 2046347 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_3 | 404664 | 405479 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 403867 | 404667 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 12619 | 13857 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 13854 | 15998 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 11635 | 12618 | cylI | 0/0 | 100 | 100 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 19277 | 19483 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 16010 | 18991 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 19602 | 19886 | cylR1 | 0/0 | 100 | 99 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 19887 | 20087 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 19052 | 19243 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_3 | 2186790 | 2190101 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 2190105 | 2191535 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 2191532 | 2193415 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 1909737 | 1912751 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_3 | 175463 | 176390 | efaA | 1/1 | 100 | 99 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_3 | 1263776 | 1269739 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_3 | 20117 | 23344 | fss3 | 0/0 | 100 | 99 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_3 | 2895931 | 2897463 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_3 | 2895028 | 2895882 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_3 | 2193509 | 2194363 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80564
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 2613817 | 2615841 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_2 | 2768728 | 2769738 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_2 | 1337092 | 1337907 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1337904 | 1338704 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1339177 | 1340346 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1340365 | 1341831 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1341901 | 1344411 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1344435 | 1345286 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1345313 | 1347766 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1347784 | 1348182 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1348241 | 1349380 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1349406 | 1350749 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1350749 | 1351561 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2623185 | 2626496 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 2621751 | 2623181 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 2619871 | 2621754 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 57004 | 60897 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 2902772 | 2905786 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 784771 | 788889 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 1673066 | 1673992 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_2 | 1908149 | 1908880 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1908969 | 1909697 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1909694 | 1911037 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 362912 | 368875 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_2 | 1324353 | 1329308 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_2 | 1829766 | 1832993 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 1911272 | 1912804 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 1912853 | 1913707 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_2 | 2618923 | 2619777 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80725
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_7 | 1255575 | 1257740 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_7 | 814058 | 816040 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_7 | 1984132 | 1985106 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
80740
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1108796 | 1109806 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 2362337 | 2363152 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2361540 | 2362340 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1252273 | 1255584 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1255588 | 1257018 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1257015 | 1258898 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 972964 | 975978 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2114046 | 2114972 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1917875 | 1918606 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1917058 | 1917786 | fsrB | 0/0 | 100 | 98 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1915720 | 1917061 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 498689 | 504652 | fss1 | 0/0 | 100 | 97 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1913951 | 1915483 | gelE | 0/0 | 100 | 98 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1913048 | 1913902 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1258992 | 1259846 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80797
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 758836 | 760860 | ace | 0/0 | 100 | 98 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 603031 | 604041 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1879964 | 1880779 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1879167 | 1879967 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 197379 | 198362 | cylI | 2/2 | 100 | 96 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 745594 | 748905 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 748909 | 750339 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 750336 | 752219 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 467103 | 470117 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1621415 | 1622341 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1426719 | 1427450 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1425902 | 1426630 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1424562 | 1425905 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2765094 | 2771057 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1422795 | 1424327 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_4 | 31392 | 35309 | prgB/asc10 | 2/2 | 100 | 95 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1421893 | 1422747 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 752313 | 753157 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80798
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_4 | 876817 | 878841 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_4 | 645146 | 646156 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_4 | 2189047 | 2189862 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2188250 | 2189050 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2186608 | 2187777 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2185123 | 2186589 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2182543 | 2185053 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2181668 | 2182519 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2179188 | 2181641 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2178772 | 2179170 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2177574 | 2178713 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2176205 | 2177548 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 2175393 | 2176205 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 3155568 | 3156806 | cylA | 0/0 | 100 | 99 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 3153427 | 3155571 | cylB | 0/0 | 100 | 98 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 3156807 | 3157790 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 3149942 | 3150148 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 3150434 | 3153415 | cylM | 0/0 | 100 | 99 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 3149539 | 3149823 | cylR1 | 0/0 | 100 | 99 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 3149338 | 3149538 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 3150182 | 3150373 | cylS | 0/0 | 100 | 99 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_4 | 827162 | 830473 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_4 | 830477 | 831907 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_4 | 831904 | 833787 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_4 | 3112721 | 3116640 | EF0485 | 3/4 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_4 | 175498 | 178512 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_4 | 471378 | 475496 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_4 | 1822897 | 1823823 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_4 | 1586181 | 1586913 | fsrA | 1/1 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_4 | 1585364 | 1586092 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_4 | 1584024 | 1585367 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_4 | 2801044 | 2807007 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_4 | 2197646 | 2202601 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_4 | 1660737 | 1663964 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_4 | 1582257 | 1583789 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 41114 | 45040 | prgB/asc10 | 3/11 | 100 | 96 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_4 | 1581354 | 1582208 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_4 | 833881 | 834735 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80829
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 758836 | 760860 | ace | 0/0 | 100 | 98 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 603031 | 604041 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1879961 | 1880776 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1879164 | 1879964 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 197379 | 198362 | cylI | 2/2 | 100 | 96 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 745594 | 748905 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 748909 | 750339 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 750336 | 752219 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 467103 | 470117 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1621413 | 1622339 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1426717 | 1427448 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1425900 | 1426628 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1424560 | 1425903 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 2765090 | 2771053 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1422793 | 1424325 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 17403 | 21320 | prgB/asc10 | 2/2 | 100 | 95 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1421891 | 1422745 | sprE | 0/0 | 100 | 99 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 752313 | 753157 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
80889
## [1] "No virulence genes from VFDB database were found"81048
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_9 | 79917 | 80927 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_99 | 12699 | 13514 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_99 | 11902 | 12702 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_84 | 15809 | 19120 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_84 | 14375 | 15805 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_84 | 12495 | 14378 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_57 | 91139 | 95028 | EF0485 | 23/44 | 98 | 94 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_102 | 5047 | 8909 | EF3023 | 0/0 | 94 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_89 | 132207 | 133133 | efaA | 0/0 | 100 | 99 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_57 | 39711 | 45679 | fss1 | 5/5 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_53 | 1901 | 5128 | fss3 | 0/0 | 100 | 99 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_51 | 14495 | 16027 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_51 | 16076 | 16930 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_84 | 11557 | 12401 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
81314
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2257012 | 2259036 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 2410138 | 2411148 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1079971 | 1080786 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1080783 | 1081583 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2857467 | 2858705 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2858702 | 2860846 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2856483 | 2857466 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2864125 | 2864331 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2860858 | 2863839 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2864450 | 2864734 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2864735 | 2864935 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2863900 | 2864091 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2266380 | 2269691 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2264946 | 2266376 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2263066 | 2264949 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2897675 | 2901592 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_4 | 36436 | 40361 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2544071 | 2547085 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1322352 | 1323278 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2844586 | 2850207 | esp | 0/0 | 100 | 100 | AAD09858 | (esp) Enterococcal surface protein; Esp [Esp (VF0353)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1553363 | 1554094 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1554183 | 1554911 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1554908 | 1556251 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 125651 | 131614 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1479039 | 1482266 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1556486 | 1558018 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1558067 | 1558921 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2262118 | 2262972 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
81378
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1278760 | 1280925 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_1 | 1694609 | 1697780 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1790660 | 1792642 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_1 | 520548 | 521522 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
81440
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1803203 | 1805227 | ace | 0/0 | 100 | 97 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 1958762 | 1959772 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 696683 | 697498 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 697495 | 698295 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 698768 | 699937 | cpsC | 0/0 | 100 | 97 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 699956 | 701422 | cpsD | 0/0 | 100 | 99 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 701492 | 704002 | cpsE | 0/0 | 100 | 98 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 704071 | 706524 | cpsG | 0/0 | 100 | 99 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 706542 | 706940 | cpsH | 0/0 | 100 | 98 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 706999 | 708138 | cpsI | 0/0 | 100 | 99 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 708164 | 709507 | cpsJ | 0/0 | 100 | 98 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 709507 | 710319 | cpsK | 0/0 | 100 | 99 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1814749 | 1818060 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1813315 | 1814745 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1811435 | 1813318 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2092524 | 2095538 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 243052 | 247170 | EF3023 | 0/0 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 975580 | 976506 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1164470 | 1165201 | fsrA | 0/0 | 100 | 99 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1165290 | 1166018 | fsrB | 0/0 | 100 | 99 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1166015 | 1167358 | fsrC | 0/0 | 100 | 99 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1167593 | 1169125 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 8402 | 12319 | prgB/asc10 | 2/2 | 100 | 96 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 1169174 | 1170028 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 1810497 | 1811341 | srtC | 0/0 | 99 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
81456
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 409022 | 410032 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1734190 | 1735005 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1733393 | 1734193 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2978787 | 2980025 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2976646 | 2978790 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2980026 | 2981009 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2973161 | 2973367 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2973653 | 2976634 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2972758 | 2973042 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2972557 | 2972757 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 2973401 | 2973592 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 569348 | 572659 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 572663 | 574093 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 574090 | 575973 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2673290 | 2677207 | EF0149 | 0/0 | 100 | 100 | NP_813951 | (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2938702 | 2942619 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 63358 | 67283 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2204209 | 2208071 | EF3023 | 0/0 | 94 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1470863 | 1471789 | efaA | 0/0 | 100 | 99 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 2622788 | 2628751 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1311231 | 1314458 | fss3 | 0/0 | 100 | 99 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1261105 | 1262637 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1260202 | 1261056 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 576067 | 576911 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
81863
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 544924 | 546948 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_2 | 391027 | 392037 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_2 | 1822837 | 1823652 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1822040 | 1822840 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1820398 | 1821567 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1818913 | 1820379 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1816333 | 1818843 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1815458 | 1816309 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1812978 | 1815431 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1812562 | 1812960 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1811364 | 1812503 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1809995 | 1811338 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1809183 | 1809995 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 534269 | 537580 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 537584 | 539014 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 539011 | 540894 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1161534 | 1165427 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 255025 | 258039 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 432525 | 436643 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 1486747 | 1487673 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_2 | 1251860 | 1252591 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1251043 | 1251771 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1249703 | 1251046 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 853556 | 859519 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_2 | 1831436 | 1836391 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_2 | 1326415 | 1329642 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 1247936 | 1249468 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_3 | 1 | 3789 | prgB/asc10 | 0/0 | 97 | 96 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 1247033 | 1247887 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_2 | 540988 | 541842 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
81956
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 1256853 | 1257863 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 2555455 | 2556270 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2554658 | 2555458 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2553016 | 2554185 | cpsC | 0/0 | 100 | 99 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2551568 | 2552997 | cpsD | 0/0 | 97 | 99 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2547265 | 2549775 | cpsE | 0/0 | 100 | 99 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2546390 | 2547241 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2543910 | 2546363 | cpsG | 0/0 | 100 | 99 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2543494 | 2543892 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2542296 | 2543435 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2540927 | 2542270 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2540115 | 2540927 | cpsK | 0/0 | 100 | 99 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 823085 | 824323 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 820944 | 823088 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 824324 | 825307 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 864478 | 865461 | cylI | 2/2 | 100 | 96 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 817459 | 817665 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 817951 | 820932 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 817056 | 817340 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 816855 | 817055 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 817699 | 817890 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_1 | 1417179 | 1420490 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1420494 | 1421924 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1421921 | 1423804 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 783001 | 786918 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 62823 | 66685 | EF3023 | 0/0 | 94 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 2264858 | 2265784 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 496519 | 502482 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 2564054 | 2569006 | fss2 | 1/3 | 100 | 97 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 1423898 | 1424742 | srtC | 0/0 | 99 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
81958
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_7 | 1424776 | 1426941 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_4 | 651683 | 652498 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 652495 | 653295 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 653768 | 654937 | cpsC | 0/0 | 100 | 99 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_4 | 654956 | 656385 | cpsD | 0/0 | 97 | 99 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_6 | 248807 | 250045 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_6 | 246666 | 248810 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_6 | 250046 | 251029 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_6 | 243181 | 243387 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_6 | 243673 | 246654 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_6 | 242778 | 243062 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_6 | 242577 | 242777 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_6 | 243421 | 243612 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_6 | 208723 | 212640 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_4 | 235249 | 239111 | EF3023 | 0/0 | 94 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_16 | 190249 | 196212 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_4 | 638947 | 643899 | fss2 | 1/3 | 100 | 97 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_7 | 831824 | 833806 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_7 | 2181283 | 2182257 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
81973
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 986935 | 988959 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_2 | 1178219 | 1179229 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_2 | 2838802 | 2839617 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2839614 | 2840414 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2840887 | 2842056 | cpsC | 0/0 | 100 | 98 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2842075 | 2843541 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2843611 | 2846121 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2846145 | 2846996 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2847023 | 2849476 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2849494 | 2849892 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2849951 | 2851090 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2851116 | 2852459 | cpsJ | 0/0 | 100 | 99 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2852459 | 2853271 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 996303 | 999614 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 994869 | 996299 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 992989 | 994872 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 1313337 | 1316351 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 102326 | 103252 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_2 | 1911189 | 1917152 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_2 | 217614 | 220841 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 992041 | 992895 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
82126
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_5 | 397943 | 400108 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_5 | 2697726 | 2699708 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_5 | 1126902 | 1127876 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
82128
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 865742 | 867766 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_2 | 713630 | 714640 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_2 | 2004944 | 2005759 | cpsA | 0/0 | 100 | 99 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2004147 | 2004947 | cpsB | 0/0 | 100 | 99 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 235632 | 236870 | cylA | 0/0 | 100 | 100 | AAM75253 | (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 233491 | 235635 | cylB | 0/0 | 100 | 100 | AAM75252 | (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 236871 | 237854 | cylI | 0/0 | 100 | 97 | AAM75254 | (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 230006 | 230212 | cylL | 0/0 | 100 | 100 | AAM75249 | (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 230498 | 233479 | cylM | 0/0 | 100 | 100 | AAM75251 | (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 229603 | 229887 | cylR1 | 0/0 | 100 | 100 | AAM75248 | (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 229402 | 229602 | cylR2 | 0/0 | 100 | 100 | AAM75247 | (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 230246 | 230437 | cylS | 0/0 | 100 | 100 | AAM75250 | (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594] |
| contig_2 | 855087 | 858398 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 858402 | 859832 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 859829 | 861712 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 192745 | 196662 | EF0485 | 0/0 | 100 | 100 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_6 | 1333 | 5258 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 577694 | 580708 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 1762258 | 1763184 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_2 | 1570706 | 1571437 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1569889 | 1570617 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 1568549 | 1569892 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 2994312 | 3000275 | fss1 | 0/0 | 100 | 98 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_2 | 1642534 | 1645761 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 1566782 | 1568314 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 1565879 | 1566733 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_2 | 861806 | 862660 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
82591
## [1] "No virulence genes from VFDB database were found"82961
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_4 | 1385979 | 1388144 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_4 | 1842195 | 1845366 | fss3 | 0/0 | 98 | 91 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_4 | 1937608 | 1939590 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_4 | 666257 | 667231 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
84170
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2680586 | 2682610 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 2873961 | 2874971 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1417660 | 1418475 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1418472 | 1419272 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1419694 | 1420863 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1420882 | 1422348 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1422418 | 1424928 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1424952 | 1425803 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1425830 | 1428283 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1428301 | 1428699 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1428758 | 1429897 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1429923 | 1431266 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1431266 | 1432078 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2689954 | 2693265 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2688520 | 2689950 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2686640 | 2688523 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 727535 | 731452 | EF0149 | 0/0 | 100 | 100 | NP_813951 | (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 996757 | 1000650 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 3010890 | 3013904 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 233563 | 237681 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1740352 | 1741278 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1970945 | 1971676 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1971765 | 1972493 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1972490 | 1973833 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 652047 | 658010 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1404921 | 1409876 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 1897053 | 1900280 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1974068 | 1975600 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1975649 | 1976503 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2685692 | 2686546 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
85134
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2693638 | 2695662 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 2848548 | 2849558 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 1414930 | 1415745 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1415742 | 1416542 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1417015 | 1418184 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1418203 | 1419669 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1419739 | 1422249 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1422273 | 1423124 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1423151 | 1425604 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1425622 | 1426020 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1426079 | 1427218 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1427244 | 1428587 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 1428587 | 1429399 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2703006 | 2706317 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2701572 | 2703002 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2699692 | 2701575 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 727467 | 731384 | EF0149 | 0/0 | 100 | 100 | NP_813951 | (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 995359 | 999252 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 11328 | 15253 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 2982592 | 2985606 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 233596 | 237714 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 1752076 | 1753002 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1982668 | 1983399 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 1983488 | 1984216 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_1 | 652222 | 658185 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 1402191 | 1407146 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_1 | 1908777 | 1912004 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 1987123 | 1988655 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 1988704 | 1989558 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2698744 | 2699598 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
85160
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 1455599 | 1457623 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_2 | 1301703 | 1302713 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_2 | 2735536 | 2736351 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2734739 | 2735539 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2733097 | 2734266 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2731612 | 2733078 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2729032 | 2731542 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2728157 | 2729008 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2725677 | 2728130 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2725261 | 2725659 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2724063 | 2725202 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2722694 | 2724037 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 2721882 | 2722694 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_2 | 1444944 | 1448255 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 1448259 | 1449689 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 1449686 | 1451569 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_2 | 263321 | 267238 | EF0149 | 0/0 | 100 | 100 | NP_813951 | (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_1 | 10006 | 13931 | EF0485 | 3/11 | 100 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 3152029 | 3155922 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_2 | 1165655 | 1168669 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 756991 | 761109 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_2 | 2398280 | 2399206 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_2 | 2167883 | 2168614 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 2167066 | 2167794 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_2 | 336520 | 342483 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_2 | 2744135 | 2749090 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_2 | 2239279 | 2242506 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_2 | 2162627 | 2164159 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_2 | 2161724 | 2162578 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_2 | 1451663 | 1452517 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
85712
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 2189106 | 2191130 | ace | 0/0 | 100 | 97 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_1 | 2034793 | 2035803 | bopD | 0/0 | 100 | 99 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_1 | 461120 | 461935 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 460323 | 461123 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_1 | 2176247 | 2179558 | ebpA | 0/0 | 100 | 99 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2179562 | 2180992 | ebpB | 0/0 | 100 | 99 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 2180989 | 2182872 | ebpC | 1/6 | 100 | 99 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_1 | 1899192 | 1902206 | EF0818 | 0/0 | 100 | 99 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 992289 | 996407 | EF3023 | 0/0 | 100 | 99 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_1 | 194170 | 195096 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_1 | 1386147 | 1392110 | fss1 | 0/0 | 100 | 99 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_1 | 35558 | 38785 | fss3 | 0/0 | 100 | 99 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_1 | 2851689 | 2853221 | gelE | 0/0 | 100 | 99 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_1 | 2850786 | 2851640 | sprE | 0/0 | 100 | 98 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_1 | 2182966 | 2183820 | srtC | 0/0 | 100 | 99 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
86253
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_1 | 525922 | 528087 | acm | 0/0 | 100 | 100 | AAN12397 | (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] |
| contig_1 | 1014958 | 1016940 | scm | 0/0 | 100 | 100 | ZP_00604835 | (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO] |
| contig_1 | 2199112 | 2200086 | sgrA | 0/0 | 100 | 100 | ZP_00602747 | (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO] |
86535
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_3 | 618092 | 620116 | ace | 0/0 | 100 | 100 | NP_814829 | (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] |
| contig_3 | 424857 | 425867 | bopD | 0/0 | 100 | 100 | NP_814691 | (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583] |
| contig_3 | 1900013 | 1900828 | cpsA | 0/0 | 100 | 100 | NP_816141 | (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1899216 | 1900016 | cpsB | 0/0 | 100 | 100 | NP_816140 | (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1897574 | 1898743 | cpsC | 0/0 | 100 | 100 | NP_816139 | (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1896089 | 1897555 | cpsD | 0/0 | 100 | 100 | NP_816138 | (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1893509 | 1896019 | cpsE | 0/0 | 100 | 100 | NP_816137 | (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1892634 | 1893485 | cpsF | 0/0 | 100 | 100 | NP_816136 | (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1890154 | 1892607 | cpsG | 0/0 | 100 | 100 | NP_816135 | (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1889738 | 1890136 | cpsH | 0/0 | 100 | 100 | NP_816134 | (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1888540 | 1889679 | cpsI | 0/0 | 100 | 100 | NP_816133 | (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1887171 | 1888514 | cpsJ | 0/0 | 100 | 100 | NP_816132 | (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 1886359 | 1887171 | cpsK | 0/0 | 100 | 100 | NP_816131 | (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583] |
| contig_3 | 607437 | 610748 | ebpA | 0/0 | 100 | 100 | NP_814821 | (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 610752 | 612182 | ebpB | 0/0 | 100 | 100 | NP_814822 | (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_3 | 612179 | 614062 | ebpC | 1/6 | 100 | 100 | NP_814823 | (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
| contig_12 | 21168 | 25061 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 3210967 | 3214860 | EF0485 | 3/30 | 99 | 95 | NP_814266 | (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 288821 | 291835 | EF0818 | 0/0 | 100 | 100 | NP_814561 | (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_3 | 2487694 | 2491812 | EF3023 | 0/0 | 100 | 100 | NP_816637 | (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583] |
| contig_3 | 1562588 | 1563514 | efaA | 0/0 | 100 | 100 | NP_815739 | (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583] |
| contig_3 | 1327700 | 1328431 | fsrA | 0/0 | 100 | 100 | NP_815519 | (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_3 | 1326883 | 1327611 | fsrB | 0/0 | 100 | 100 | NP_815518 | (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_3 | 1325543 | 1326886 | fsrC | 0/0 | 100 | 100 | NP_815517 | (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583] |
| contig_3 | 2902989 | 2908952 | fss1 | 0/0 | 100 | 100 | NP_813892 | (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583] |
| contig_3 | 1908612 | 1913567 | fss2 | 0/0 | 100 | 100 | NP_816151 | (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583] |
| contig_3 | 1403588 | 1406815 | fss3 | 0/0 | 100 | 100 | NP_815578 | (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583] |
| contig_3 | 1323776 | 1325308 | gelE | 0/0 | 100 | 100 | NP_815516 | (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583] |
| contig_7 | 67472 | 71389 | prgB/asc10 | 2/4 | 100 | 93 | NP_817031 | (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583] |
| contig_3 | 1322873 | 1323727 | sprE | 0/0 | 100 | 100 | NP_815515 | (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583] |
| contig_3 | 614156 | 615010 | srtC | 0/0 | 100 | 100 | NP_814824 | (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583] |
barcode17
## [1] "No virulence genes from VFDB database were found"barcode18
## [1] "No virulence genes from VFDB database were found"barcode19
## [1] "No virulence genes from VFDB database were found"Citation
If using TORMES, please cite it as:
Narciso Martin Quijada, David Rodriguez-Lazaro, Jose Maria Eiros, Marta Hernandez (2019). TORMES: an automated pipeline for whole bacterial genome analysis. Bioinformatics, 35(21), 4207–4212, https://doi.org/10.1093/bioinformatics/btz220.
TORMES is a pipeline that relies in many different software and databases that should be cited when using TORMES. The following software and databases were used for this analysis:
- GNU Parallel, O. Tange, 2018
- QUAST, A. Gurevich et al., 2013
- Barrnap, T. Seemann
- Kraken2, Wood et al., 2019
- RDP Classifier, Q. Wang et al., 2007
- mlst, T. Seemann
- ABRicate, T. Seemann
- ResFinder database, E. Zankari et al., 2012
- CARD database, A.G. McArthur et al., 2013
- ARG-ANNOT database, S.K. Gupta et al., 2014
- VFDB database, L. Chen et al., 2005
- Prodigal, Hyatt et al., 2010
- Prokka, T. Seemann, 2014
- Roary, A.J. Page et al., 2015
- R, R Development Core Team,
2008
- ggplot2, H. Wickham, 2009
- ggtree, G. Yu et al., 2016
- knitr, Y. Xie, 2015
- plotly, C. Sievert et al., 2017
- RColorBrewer, E. Neuwirth and R.C. Brewer, 2014
- reshape2, H. Wickham, 2007
- rmarkdown, J.J. Allaire, 2015
- treeio, L-G. Wang et al., 2019