TORMES version 1.3.0


Samples description


Back to index

Assembly statistics


Field Description
Sample Name of the sample
Reads Total number of reads after quality filtering
AvgReadLen Average read length after quality filtering
Contigs Number of contigs of the draft genome (>200bp)
GenomeLength Length (bp) of the draft genome
LargestContig Length (bp) of the largest contig in the genome
N50 “Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly” (Miller et al., 2010)
GC GC content (%) of the draft genome
Depth Number of times each nucleotide position in the draft genome has a read that align to that position


* When already assembled genomes are included for TORMES analysis, “NA” will appear for “Reads”, “AvgReadLen” and “Depth” fields.



Select the parameter

Number of contigs
## Warning: `arrange_()` was deprecated in dplyr 0.7.0.
## Please use `arrange()` instead.
## See vignette('programming') for more help

Average number of contigs per sample = 6.9518072

Genome length

Average genome length per sample = 3.0912941^{6} bp

Largest contig length

Average largest contig length per sample = 2.7912088^{6} bp

N50

Average N50 per sample = 2.7858673^{6} bp

GC content

Average GC content per sample = 37.784%

Number of reads
## Warning: Ignoring 83 observations
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

Average number of reads per sample = NaN

Average read length
## Warning: Ignoring 83 observations
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

Average read length per sample = NaN bp

Sequencing depth
## Warning: Ignoring 83 observations
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

Average sequencing depth = NaNX


Back to index

Taxonomic identification


Taxonomic identification was performed by using Kraken2 (Wood et al., 2019). Further details can be found in the Kraken2 webpage. Additionally, 16S rRNA genes were extracted from each genome by using Barrnap and used for taxonomic classification by using the RDP Classifier (Wang et al., 2007) at a confidence level of 0.8. Further details can be found in the RDPTools webpage.


Taxonomic identification by using Kraken2

The number between brackets refers to the percentage of reads (when starting TORMES from raw reads) or contigs (when starting TORMES from already assembled genomes) from each sample covered by the clade rooted at this taxon.


Sample Family Genus Species
72855 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (87.50%)
72882 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus casseliflavus (50.00%)
72927 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
73054 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus casseliflavus (50.00%)
73201 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
73338 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
73611 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
74016 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
74089 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
75125 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
75176 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
75411 Enterococcaceae (66.67%) Enterococcus (66.67%) Enterococcus faecalis (66.67%)
75520 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
75582 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (66.67%)
75715 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
75746 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
75840 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
76174 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
76302 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
76304 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
76646 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
76746 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
76793 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
76952 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
76967 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
76985 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
77019 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
77340 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
77364 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (66.67%)
77448 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
77566 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
77655 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (95.83%)
77771 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
77804 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (50.00%)
78036 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
78039 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
78041 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
78203 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
78272 Enterococcaceae (90.00%) Enterococcus (90.00%) Enterococcus faecalis (90.00%)
78438 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
78506 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (50.00%)
78507 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
78555 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
78894 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
79576 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
79578 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
79579 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
79707 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
79867 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
80213 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (66.67%)
80275 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
80343 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
80344 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
80411 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
80564 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (75.00%)
80725 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
80740 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
80797 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
80798 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
80829 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
80889 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
81048 Enterococcaceae (92.39%) Enterococcus (92.39%) Enterococcus faecalis (91.30%)
81314 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
81378 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
81440 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
81456 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
81863 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
81956 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
81958 Enterococcaceae (96.43%) Enterococcus (96.43%) Enterococcus faecium (75.00%)
81973 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (75.00%)
82126 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
82128 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (100.00%)
82591 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus sp. HSIEG1 (100.00%)
82961 Enterococcaceae (92.31%) Enterococcus (92.31%) Enterococcus faecium (92.31%)
84170 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (80.00%)
85134 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (75.00%)
85160 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (80.00%)
85712 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (50.00%)
86253 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecium (100.00%)
86535 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus faecalis (77.78%)
barcode17 Enterococcaceae (100.00%) Enterococcus (100.00%) Enterococcus sp. HSIEG1 (62.50%)
barcode18 Enterococcaceae (72.73%) Enterococcus (72.73%) Enterococcus casseliflavus (27.27%)
barcode19 Enterococcaceae (91.30%) Enterococcus (91.30%) Enterococcus avium (43.48%)


Taxonomic identification by using RDP Classifier


Field Description
Sample Name of the sample where the 16S rRNA gene was found. Note that the same sample might harbor more than one 16S rRNA gene copy.
Contig Name of the contig where the 16S rRNA gene was found.
Position Position within the contig where the 16S rRNA gene was found (begin-end). Note that the 16S rRNA genes identified for one sample might not harbor the same length (fragmented, etc.).
Strand Strand of the 16S rRNA gene defined as forward (+) or reverse (-).
Order Taxonomic order that the 16S rRNA gene was assigned over a confidence level of 0.8.
Family Taxonomic family that the 16S rRNA gene was assigned over a confidence level of 0.8.
Genus Taxonomic genus that the 16S rRNA gene was assigned over a confidence level of 0.8.


Sample Contig Position Strand Order Family Genus
72855-16S_rRNA contig_2 953317-954875 (+) Lactobacillales Enterococcaceae Enterococcus
72855-16S_rRNA contig_4 106670-108228 (+) Lactobacillales Enterococcaceae Enterococcus
72855-16S_rRNA contig_2 1347027-1348585 (+) Lactobacillales Enterococcaceae Enterococcus
72855-16S_rRNA contig_2 674752-676310 (-) Lactobacillales Enterococcaceae Enterococcus
72882-16S_rRNA contig_1 1227248-1228805 (+) Lactobacillales Enterococcaceae Enterococcus
72882-16S_rRNA contig_1 363891-365448 (-) Lactobacillales Enterococcaceae Enterococcus
72882-16S_rRNA contig_1 3169784-3171341 (-) Lactobacillales Enterococcaceae Enterococcus
72882-16S_rRNA contig_1 2607490-2609047 (-) Lactobacillales Enterococcaceae Enterococcus
72882-16S_rRNA contig_1 605135-606692 (-) Lactobacillales Enterococcaceae Enterococcus
72927-16S_rRNA contig_1 2542479-2544037 (-) Lactobacillales Enterococcaceae Enterococcus
72927-16S_rRNA contig_1 297013-298571 (+) Lactobacillales Enterococcaceae Enterococcus
72927-16S_rRNA contig_1 2090363-2091921 (-) Lactobacillales Enterococcaceae Enterococcus
72927-16S_rRNA contig_1 2894896-2896454 (-) Lactobacillales Enterococcaceae Enterococcus
73054-16S_rRNA contig_1 1478223-1479780 (+) Lactobacillales Enterococcaceae Enterococcus
73054-16S_rRNA contig_1 614867-616424 (-) Lactobacillales Enterococcaceae Enterococcus
73054-16S_rRNA contig_1 3424340-3425897 (-) Lactobacillales Enterococcaceae Enterococcus
73054-16S_rRNA contig_1 2862047-2863604 (-) Lactobacillales Enterococcaceae Enterococcus
73054-16S_rRNA contig_1 856112-857669 (-) Lactobacillales Enterococcaceae Enterococcus
73201-16S_rRNA contig_1 262033-263591 (+) Lactobacillales Enterococcaceae Enterococcus
73201-16S_rRNA contig_1 888661-890219 (+) Lactobacillales Enterococcaceae Enterococcus
73201-16S_rRNA contig_1 4126-5684 (-) Lactobacillales Enterococcaceae Enterococcus
73201-16S_rRNA contig_1 2405086-2406644 (-) Lactobacillales Enterococcaceae Enterococcus
73338-16S_rRNA contig_1 2275795-2277353 (-) Lactobacillales Enterococcaceae Enterococcus
73338-16S_rRNA contig_1 3055324-3056882 (-) Lactobacillales Enterococcaceae Enterococcus
73338-16S_rRNA contig_1 525914-527472 (+) Lactobacillales Enterococcaceae Enterococcus
73338-16S_rRNA contig_1 132206-133764 (+) Lactobacillales Enterococcaceae Enterococcus
73611-16S_rRNA contig_2 1383349-1384907 (+) Lactobacillales Enterococcaceae Enterococcus
73611-16S_rRNA contig_2 946912-948470 (+) Lactobacillales Enterococcaceae Enterococcus
73611-16S_rRNA contig_2 1053906-1055464 (+) Lactobacillales Enterococcaceae Enterococcus
73611-16S_rRNA contig_2 713637-715195 (+) Lactobacillales Enterococcaceae Enterococcus
73611-16S_rRNA contig_3 73992-75550 (-) Lactobacillales Enterococcaceae Enterococcus
73611-16S_rRNA contig_2 212837-214395 (-) Lactobacillales Enterococcaceae Enterococcus
74016-16S_rRNA contig_2 1863380-1864938 (+) Lactobacillales Enterococcaceae Enterococcus
74016-16S_rRNA contig_2 1155538-1157096 (+) Lactobacillales Enterococcaceae Enterococcus
74016-16S_rRNA contig_2 1388813-1390371 (+) Lactobacillales Enterococcaceae Enterococcus
74016-16S_rRNA contig_2 1497314-1498872 (+) Lactobacillales Enterococcaceae Enterococcus
74016-16S_rRNA contig_2 126719-128277 (-) Lactobacillales Enterococcaceae Enterococcus
74016-16S_rRNA contig_2 654753-656311 (-) Lactobacillales Enterococcaceae Enterococcus
74089-16S_rRNA contig_1 1225801-1227359 (+) Lactobacillales Enterococcaceae Enterococcus
74089-16S_rRNA contig_1 2676106-2677664 (-) Lactobacillales Enterococcaceae Enterococcus
74089-16S_rRNA contig_1 870466-872024 (+) Lactobacillales Enterococcaceae Enterococcus
74089-16S_rRNA contig_1 584657-586215 (-) Lactobacillales Enterococcaceae Enterococcus
75125-16S_rRNA contig_3 16411-17969 (+) Lactobacillales Enterococcaceae Enterococcus
75125-16S_rRNA contig_3 2420583-2422141 (+) Lactobacillales Enterococcaceae Enterococcus
75125-16S_rRNA contig_3 2527577-2529135 (+) Lactobacillales Enterococcaceae Enterococcus
75125-16S_rRNA contig_3 2185786-2187344 (+) Lactobacillales Enterococcaceae Enterococcus
75125-16S_rRNA contig_3 1154451-1156009 (-) Lactobacillales Enterococcaceae Enterococcus
75125-16S_rRNA contig_3 1685441-1686999 (-) Lactobacillales Enterococcaceae Enterococcus
75176-16S_rRNA contig_1 1955476-1957034 (+) Lactobacillales Enterococcaceae Enterococcus
75176-16S_rRNA contig_1 1523606-1525164 (+) Lactobacillales Enterococcaceae Enterococcus
75176-16S_rRNA contig_1 1630599-1632157 (+) Lactobacillales Enterococcaceae Enterococcus
75176-16S_rRNA contig_1 1290331-1291889 (+) Lactobacillales Enterococcaceae Enterococcus
75176-16S_rRNA contig_1 262698-264256 (-) Lactobacillales Enterococcaceae Enterococcus
75176-16S_rRNA contig_1 789225-790783 (-) Lactobacillales Enterococcaceae Enterococcus
75411-16S_rRNA contig_1 2737605-2739163 (+) Lactobacillales Enterococcaceae Enterococcus
75411-16S_rRNA contig_1 2072295-2073853 (-) Lactobacillales Enterococcaceae Enterococcus
75411-16S_rRNA contig_1 2451626-2453184 (-) Lactobacillales Enterococcaceae Enterococcus
75411-16S_rRNA contig_1 568826-570384 (+) Lactobacillales Enterococcaceae Enterococcus
75520-16S_rRNA contig_1 2343866-2345424 (-) Lactobacillales Enterococcaceae Enterococcus
75520-16S_rRNA contig_1 275324-276882 (-) Lactobacillales Enterococcaceae Enterococcus
75520-16S_rRNA contig_1 923289-924847 (+) Lactobacillales Enterococcaceae Enterococcus
75520-16S_rRNA contig_1 531345-532903 (+) Lactobacillales Enterococcaceae Enterococcus
75582-16S_rRNA contig_1 2749760-2751318 (+) Lactobacillales Enterococcaceae Enterococcus
75582-16S_rRNA contig_1 1742163-1743721 (-) Lactobacillales Enterococcaceae Enterococcus
75582-16S_rRNA contig_1 417-1975 (+) Lactobacillales Enterococcaceae Enterococcus
75582-16S_rRNA contig_1 2465629-2467187 (-) Lactobacillales Enterococcaceae Enterococcus
75715-16S_rRNA contig_1 2123110-2124668 (+) Lactobacillales Enterococcaceae Enterococcus
75715-16S_rRNA contig_1 714797-716355 (-) Lactobacillales Enterococcaceae Enterococcus
75715-16S_rRNA contig_1 1355942-1357500 (+) Lactobacillales Enterococcaceae Enterococcus
75715-16S_rRNA contig_1 1070135-1071693 (-) Lactobacillales Enterococcaceae Enterococcus
75746-16S_rRNA contig_9 1141255-1142813 (-) Lactobacillales Enterococcaceae Enterococcus
75746-16S_rRNA contig_9 1468981-1470539 (-) Lactobacillales Enterococcaceae Enterococcus
75746-16S_rRNA contig_9 1575974-1577532 (-) Lactobacillales Enterococcaceae Enterococcus
75746-16S_rRNA contig_9 146-1704 (+) Lactobacillales Enterococcaceae Enterococcus
75746-16S_rRNA contig_9 1809249-1810807 (-) Lactobacillales Enterococcaceae Enterococcus
75746-16S_rRNA contig_9 2309964-2311522 (+) Lactobacillales Enterococcaceae Enterococcus
75840-16S_rRNA contig_1 484583-486141 (+) Lactobacillales Enterococcaceae Enterococcus
75840-16S_rRNA contig_1 2634348-2635906 (-) Lactobacillales Enterococcaceae Enterococcus
75840-16S_rRNA contig_1 2203035-2204593 (-) Lactobacillales Enterococcaceae Enterococcus
75840-16S_rRNA contig_1 2912912-2914470 (+) Lactobacillales Enterococcaceae Enterococcus
76174-16S_rRNA contig_7 602345-603903 (-) Lactobacillales Enterococcaceae Enterococcus
76174-16S_rRNA contig_7 926143-927701 (-) Lactobacillales Enterococcaceae Enterococcus
76174-16S_rRNA contig_7 1033137-1034695 (-) Lactobacillales Enterococcaceae Enterococcus
76174-16S_rRNA contig_15 3567-5125 (-) Lactobacillales Enterococcaceae Enterococcus
76174-16S_rRNA contig_7 306633-308191 (-) Lactobacillales Enterococcaceae Enterococcus
76174-16S_rRNA contig_7 1299336-1300894 (-) Lactobacillales Enterococcaceae Enterococcus
76174-16S_rRNA contig_7 1785231-1786789 (+) Lactobacillales Enterococcaceae Enterococcus
76302-16S_rRNA contig_1 2764978-2766536 (+) Lactobacillales Enterococcaceae Enterococcus
76302-16S_rRNA contig_1 2491141-2492699 (-) Lactobacillales Enterococcaceae Enterococcus
76302-16S_rRNA contig_1 290744-292302 (+) Lactobacillales Enterococcaceae Enterococcus
76302-16S_rRNA contig_1 1851332-1852890 (-) Lactobacillales Enterococcaceae Enterococcus
76304-16S_rRNA contig_1 959539-961097 (+) Lactobacillales Enterococcaceae Enterococcus
76304-16S_rRNA contig_1 2413990-2415548 (-) Lactobacillales Enterococcaceae Enterococcus
76304-16S_rRNA contig_1 602678-604236 (+) Lactobacillales Enterococcaceae Enterococcus
76304-16S_rRNA contig_1 316871-318429 (-) Lactobacillales Enterococcaceae Enterococcus
76646-16S_rRNA contig_1 914066-915624 (+) Lactobacillales Enterococcaceae Enterococcus
76646-16S_rRNA contig_1 1299823-1301381 (+) Lactobacillales Enterococcaceae Enterococcus
76646-16S_rRNA contig_1 3454-5012 (-) Lactobacillales Enterococcaceae Enterococcus
76646-16S_rRNA contig_1 644318-645876 (-) Lactobacillales Enterococcaceae Enterococcus
76746-16S_rRNA contig_1 2603701-2605259 (-) Lactobacillales Enterococcaceae Enterococcus
76746-16S_rRNA contig_1 710867-712425 (+) Lactobacillales Enterococcaceae Enterococcus
76746-16S_rRNA contig_1 417-1975 (+) Lactobacillales Enterococcaceae Enterococcus
76746-16S_rRNA contig_1 2214829-2216387 (-) Lactobacillales Enterococcaceae Enterococcus
76793-16S_rRNA contig_1 578411-579969 (+) Lactobacillales Enterococcaceae Enterococcus
76793-16S_rRNA contig_1 1198615-1200173 (+) Lactobacillales Enterococcaceae Enterococcus
76793-16S_rRNA contig_1 313081-314639 (-) Lactobacillales Enterococcaceae Enterococcus
76793-16S_rRNA contig_1 2623967-2625525 (-) Lactobacillales Enterococcaceae Enterococcus
76952-16S_rRNA contig_1 271004-272562 (+) Lactobacillales Enterococcaceae Enterococcus
76952-16S_rRNA contig_1 1030464-1032022 (+) Lactobacillales Enterococcaceae Enterococcus
76952-16S_rRNA contig_1 4126-5684 (-) Lactobacillales Enterococcaceae Enterococcus
76952-16S_rRNA contig_1 2550820-2552378 (-) Lactobacillales Enterococcaceae Enterococcus
76967-16S_rRNA contig_3 1547090-1548648 (-) Lactobacillales Enterococcaceae Enterococcus
76967-16S_rRNA contig_3 1871967-1873525 (-) Lactobacillales Enterococcaceae Enterococcus
76967-16S_rRNA contig_3 1978961-1980519 (-) Lactobacillales Enterococcaceae Enterococcus
76967-16S_rRNA contig_3 416620-418178 (+) Lactobacillales Enterococcaceae Enterococcus
76967-16S_rRNA contig_3 2212235-2213793 (-) Lactobacillales Enterococcaceae Enterococcus
76967-16S_rRNA contig_3 2711515-2713073 (+) Lactobacillales Enterococcaceae Enterococcus
76985-16S_rRNA contig_1 541102-542660 (+) Lactobacillales Enterococcaceae Enterococcus
76985-16S_rRNA contig_1 2747346-2748904 (+) Lactobacillales Enterococcaceae Enterococcus
76985-16S_rRNA contig_1 2024685-2026243 (-) Lactobacillales Enterococcaceae Enterococcus
76985-16S_rRNA contig_1 2489068-2490626 (-) Lactobacillales Enterococcaceae Enterococcus
77019-16S_rRNA contig_1 498628-500186 (+) Lactobacillales Enterococcaceae Enterococcus
77019-16S_rRNA contig_1 2732216-2733774 (+) Lactobacillales Enterococcaceae Enterococcus
77019-16S_rRNA contig_1 2065821-2067379 (-) Lactobacillales Enterococcaceae Enterococcus
77019-16S_rRNA contig_1 2454186-2455744 (-) Lactobacillales Enterococcaceae Enterococcus
77340-16S_rRNA contig_10 2039664-2041222 (+) Lactobacillales Enterococcaceae Enterococcus
77340-16S_rRNA contig_10 2146658-2148216 (+) Lactobacillales Enterococcaceae Enterococcus
77340-16S_rRNA contig_10 1806390-1807948 (+) Lactobacillales Enterococcaceae Enterococcus
77340-16S_rRNA contig_10 774326-775884 (-) Lactobacillales Enterococcaceae Enterococcus
77340-16S_rRNA contig_10 1303706-1305264 (-) Lactobacillales Enterococcaceae Enterococcus
77340-16S_rRNA contig_10 2476111-2477669 (+) Lactobacillales Enterococcaceae Enterococcus
77364-16S_rRNA contig_1 2681790-2683348 (+) Lactobacillales Enterococcaceae Enterococcus
77364-16S_rRNA contig_1 1674426-1675984 (-) Lactobacillales Enterococcaceae Enterococcus
77364-16S_rRNA contig_1 3102970-3104528 (+) Lactobacillales Enterococcaceae Enterococcus
77364-16S_rRNA contig_1 2400556-2402114 (-) Lactobacillales Enterococcaceae Enterococcus
77448-16S_rRNA contig_2 1528135-1529693 (+) Lactobacillales Enterococcaceae Enterococcus
77448-16S_rRNA contig_6 3788-5346 (-) Lactobacillales Enterococcaceae Enterococcus
77448-16S_rRNA contig_2 1091741-1093299 (+) Lactobacillales Enterococcaceae Enterococcus
77448-16S_rRNA contig_2 1198735-1200293 (+) Lactobacillales Enterococcaceae Enterococcus
77448-16S_rRNA contig_2 858467-860025 (+) Lactobacillales Enterococcaceae Enterococcus
77448-16S_rRNA contig_2 2666432-2667990 (-) Lactobacillales Enterococcaceae Enterococcus
77448-16S_rRNA contig_2 355782-357340 (-) Lactobacillales Enterococcaceae Enterococcus
77566-16S_rRNA contig_2 4048-5606 (-) Lactobacillales Enterococcaceae Enterococcus
77566-16S_rRNA contig_3 335245-336803 (+) Lactobacillales Enterococcaceae Enterococcus
77566-16S_rRNA contig_3 48300-49858 (-) Lactobacillales Enterococcaceae Enterococcus
77566-16S_rRNA contig_4 62098-63656 (+) Lactobacillales Enterococcaceae Enterococcus
77566-16S_rRNA contig_4 1567331-1568889 (-) Lactobacillales Enterococcaceae Enterococcus
77655-16S_rRNA contig_27 63918-65476 (-) Lactobacillales Enterococcaceae Enterococcus
77771-16S_rRNA contig_3 101006-102564 (+) Lactobacillales Enterococcaceae Enterococcus
77771-16S_rRNA contig_3 2356320-2357878 (-) Lactobacillales Enterococcaceae Enterococcus
77771-16S_rRNA contig_3 2811944-2813502 (-) Lactobacillales Enterococcaceae Enterococcus
77771-16S_rRNA contig_3 845183-846741 (+) Lactobacillales Enterococcaceae Enterococcus
77804-16S_rRNA contig_1 2709678-2711236 (+) Lactobacillales Enterococcaceae Enterococcus
77804-16S_rRNA contig_1 2418620-2420178 (-) Lactobacillales Enterococcaceae Enterococcus
77804-16S_rRNA contig_1 2055319-2056877 (-) Lactobacillales Enterococcaceae Enterococcus
77804-16S_rRNA contig_1 516726-518284 (+) Lactobacillales Enterococcaceae Enterococcus
78036-16S_rRNA contig_1 471816-473374 (+) Lactobacillales Enterococcaceae Enterococcus
78036-16S_rRNA contig_1 1319914-1321472 (+) Lactobacillales Enterococcaceae Enterococcus
78036-16S_rRNA contig_1 203003-204561 (-) Lactobacillales Enterococcaceae Enterococcus
78036-16S_rRNA contig_1 2936705-2938263 (-) Lactobacillales Enterococcaceae Enterococcus
78039-16S_rRNA contig_8 1887650-1889208 (-) Lactobacillales Enterococcaceae Enterococcus
78039-16S_rRNA contig_8 2217671-2219229 (-) Lactobacillales Enterococcaceae Enterococcus
78039-16S_rRNA contig_8 2324665-2326223 (-) Lactobacillales Enterococcaceae Enterococcus
78039-16S_rRNA contig_8 747824-749382 (+) Lactobacillales Enterococcaceae Enterococcus
78039-16S_rRNA contig_8 2557939-2559497 (-) Lactobacillales Enterococcaceae Enterococcus
78039-16S_rRNA contig_8 218444-220002 (+) Lactobacillales Enterococcaceae Enterococcus
78041-16S_rRNA contig_2 2683853-2685411 (+) Lactobacillales Enterococcaceae Enterococcus
78041-16S_rRNA contig_2 2790846-2792404 (+) Lactobacillales Enterococcaceae Enterococcus
78041-16S_rRNA contig_2 2450579-2452137 (+) Lactobacillales Enterococcaceae Enterococcus
78041-16S_rRNA contig_2 1424844-1426402 (-) Lactobacillales Enterococcaceae Enterococcus
78041-16S_rRNA contig_2 1951372-1952930 (-) Lactobacillales Enterococcaceae Enterococcus
78041-16S_rRNA contig_2 299081-300640 (+) Lactobacillales Enterococcaceae Enterococcus
78203-16S_rRNA contig_4 353852-355410 (-) Lactobacillales Enterococcaceae Enterococcus
78203-16S_rRNA contig_4 681773-683331 (-) Lactobacillales Enterococcaceae Enterococcus
78203-16S_rRNA contig_4 788767-790325 (-) Lactobacillales Enterococcaceae Enterococcus
78203-16S_rRNA contig_4 2058517-2060075 (+) Lactobacillales Enterococcaceae Enterococcus
78203-16S_rRNA contig_4 1022042-1023600 (-) Lactobacillales Enterococcaceae Enterococcus
78203-16S_rRNA contig_4 1528057-1529615 (+) Lactobacillales Enterococcaceae Enterococcus
78272-16S_rRNA contig_14 563368-564926 (+) Lactobacillales Enterococcaceae Enterococcus
78272-16S_rRNA contig_14 2658851-2660409 (+) Lactobacillales Enterococcaceae Enterococcus
78272-16S_rRNA contig_14 2029595-2031153 (-) Lactobacillales Enterococcaceae Enterococcus
78272-16S_rRNA contig_14 2395800-2397358 (-) Lactobacillales Enterococcaceae Enterococcus
78438-16S_rRNA contig_1 176435-177993 (+) Lactobacillales Enterococcaceae Enterococcus
78438-16S_rRNA contig_1 551035-552593 (+) Lactobacillales Enterococcaceae Enterococcus
78438-16S_rRNA contig_1 271385-272943 (+) Lactobacillales Enterococcaceae Enterococcus
78438-16S_rRNA contig_1 391-1949 (+) Lactobacillales Enterococcaceae Enterococcus
78438-16S_rRNA contig_1 1674016-1675574 (-) Lactobacillales Enterococcaceae Enterococcus
78438-16S_rRNA contig_1 2207475-2209033 (-) Lactobacillales Enterococcaceae Enterococcus
78506-16S_rRNA contig_2 493052-494610 (+) Lactobacillales Enterococcaceae Enterococcus
78506-16S_rRNA contig_2 2655980-2657538 (-) Lactobacillales Enterococcaceae Enterococcus
78506-16S_rRNA contig_2 915564-917122 (+) Lactobacillales Enterococcaceae Enterococcus
78506-16S_rRNA contig_2 221228-222786 (-) Lactobacillales Enterococcaceae Enterococcus
78507-16S_rRNA contig_1 650586-652144 (+) Lactobacillales Enterococcaceae Enterococcus
78507-16S_rRNA contig_1 1262055-1263613 (+) Lactobacillales Enterococcaceae Enterococcus
78507-16S_rRNA contig_1 3455-5013 (-) Lactobacillales Enterococcaceae Enterococcus
78507-16S_rRNA contig_1 377811-379369 (-) Lactobacillales Enterococcaceae Enterococcus
78555-16S_rRNA contig_3 1871776-1873334 (+) Lactobacillales Enterococcaceae Enterococcus
78555-16S_rRNA contig_3 1436861-1438419 (+) Lactobacillales Enterococcaceae Enterococcus
78555-16S_rRNA contig_3 1543855-1545413 (+) Lactobacillales Enterococcaceae Enterococcus
78555-16S_rRNA contig_3 1203586-1205144 (+) Lactobacillales Enterococcaceae Enterococcus
78555-16S_rRNA contig_3 167112-168670 (-) Lactobacillales Enterococcaceae Enterococcus
78555-16S_rRNA contig_3 697571-699129 (-) Lactobacillales Enterococcaceae Enterococcus
78894-16S_rRNA contig_2 2566739-2568297 (-) Lactobacillales Enterococcaceae Enterococcus
78894-16S_rRNA contig_2 903935-905493 (+) Lactobacillales Enterococcaceae Enterococcus
78894-16S_rRNA contig_2 61364-62922 (-) Lactobacillales Enterococcaceae Enterococcus
78894-16S_rRNA contig_2 168357-169915 (-) Lactobacillales Enterococcaceae Enterococcus
78894-16S_rRNA contig_2 1432241-1433799 (+) Lactobacillales Enterococcaceae Enterococcus
78894-16S_rRNA contig_2 401631-403189 (-) Lactobacillales Enterococcaceae Enterococcus
79576-16S_rRNA contig_2 607114-608672 (+) Lactobacillales Enterococcaceae Enterococcus
79576-16S_rRNA contig_2 3030351-3031909 (+) Lactobacillales Enterococcaceae Enterococcus
79576-16S_rRNA contig_2 2381200-2382758 (-) Lactobacillales Enterococcaceae Enterococcus
79576-16S_rRNA contig_2 2762103-2763661 (-) Lactobacillales Enterococcaceae Enterococcus
79578-16S_rRNA contig_1 370864-372422 (+) Lactobacillales Enterococcaceae Enterococcus
79578-16S_rRNA contig_1 2743671-2745229 (+) Lactobacillales Enterococcaceae Enterococcus
79578-16S_rRNA contig_1 1844806-1846364 (-) Lactobacillales Enterococcaceae Enterococcus
79578-16S_rRNA contig_1 2427465-2429023 (-) Lactobacillales Enterococcaceae Enterococcus
79579-16S_rRNA contig_1 569200-570758 (+) Lactobacillales Enterococcaceae Enterococcus
79579-16S_rRNA contig_1 2763745-2765303 (-) Lactobacillales Enterococcaceae Enterococcus
79579-16S_rRNA contig_1 2334021-2335579 (-) Lactobacillales Enterococcaceae Enterococcus
79579-16S_rRNA contig_1 3042309-3043867 (+) Lactobacillales Enterococcaceae Enterococcus
79707-16S_rRNA contig_1 1803605-1805163 (+) Lactobacillales Enterococcaceae Enterococcus
79707-16S_rRNA contig_1 704826-706384 (-) Lactobacillales Enterococcaceae Enterococcus
79707-16S_rRNA contig_1 437548-439106 (-) Lactobacillales Enterococcaceae Enterococcus
79707-16S_rRNA contig_1 974012-975570 (+) Lactobacillales Enterococcaceae Enterococcus
79867-16S_rRNA contig_1 882758-884316 (+) Lactobacillales Enterococcaceae Enterococcus
79867-16S_rRNA contig_1 1249571-1251129 (+) Lactobacillales Enterococcaceae Enterococcus
79867-16S_rRNA contig_1 3454-5012 (-) Lactobacillales Enterococcaceae Enterococcus
79867-16S_rRNA contig_1 623136-624694 (-) Lactobacillales Enterococcaceae Enterococcus
80213-16S_rRNA contig_1 502431-503989 (+) Lactobacillales Enterococcaceae Enterococcus
80213-16S_rRNA contig_1 2664051-2665609 (-) Lactobacillales Enterococcaceae Enterococcus
80213-16S_rRNA contig_1 923610-925168 (+) Lactobacillales Enterococcaceae Enterococcus
80213-16S_rRNA contig_1 222559-224117 (-) Lactobacillales Enterococcaceae Enterococcus
80275-16S_rRNA contig_3 2733403-2734961 (+) Lactobacillales Enterococcaceae Enterococcus
80275-16S_rRNA contig_3 1585472-1587030 (-) Lactobacillales Enterococcaceae Enterococcus
80275-16S_rRNA contig_3 2046772-2048330 (-) Lactobacillales Enterococcaceae Enterococcus
80275-16S_rRNA contig_3 2467231-2468789 (-) Lactobacillales Enterococcaceae Enterococcus
80343-16S_rRNA contig_1 1857954-1859512 (+) Lactobacillales Enterococcaceae Enterococcus
80343-16S_rRNA contig_1 2238857-2240415 (+) Lactobacillales Enterococcaceae Enterococcus
80343-16S_rRNA contig_1 736217-737775 (-) Lactobacillales Enterococcaceae Enterococcus
80343-16S_rRNA contig_1 1589407-1590965 (-) Lactobacillales Enterococcaceae Enterococcus
80344-16S_rRNA contig_1 2160720-2162278 (+) Lactobacillales Enterococcaceae Enterococcus
80344-16S_rRNA contig_1 1091516-1093074 (-) Lactobacillales Enterococcaceae Enterococcus
80344-16S_rRNA contig_1 652981-654539 (-) Lactobacillales Enterococcaceae Enterococcus
80344-16S_rRNA contig_1 1372745-1374303 (+) Lactobacillales Enterococcaceae Enterococcus
80411-16S_rRNA contig_3 1437321-1438879 (+) Lactobacillales Enterococcaceae Enterococcus
80411-16S_rRNA contig_3 730744-732302 (-) Lactobacillales Enterococcaceae Enterococcus
80411-16S_rRNA contig_3 1127025-1128583 (-) Lactobacillales Enterococcaceae Enterococcus
80411-16S_rRNA contig_3 2147803-2149361 (+) Lactobacillales Enterococcaceae Enterococcus
80564-16S_rRNA contig_2 502432-503990 (+) Lactobacillales Enterococcaceae Enterococcus
80564-16S_rRNA contig_2 2664142-2665700 (-) Lactobacillales Enterococcaceae Enterococcus
80564-16S_rRNA contig_2 923686-925244 (+) Lactobacillales Enterococcaceae Enterococcus
80564-16S_rRNA contig_2 222560-224118 (-) Lactobacillales Enterococcaceae Enterococcus
80725-16S_rRNA contig_7 966850-968408 (+) Lactobacillales Enterococcaceae Enterococcus
80725-16S_rRNA contig_7 1337795-1339353 (+) Lactobacillales Enterococcaceae Enterococcus
80725-16S_rRNA contig_7 1061800-1063358 (+) Lactobacillales Enterococcaceae Enterococcus
80725-16S_rRNA contig_7 789284-790842 (+) Lactobacillales Enterococcaceae Enterococcus
80725-16S_rRNA contig_7 2510507-2512065 (-) Lactobacillales Enterococcaceae Enterococcus
80725-16S_rRNA contig_7 304183-305741 (-) Lactobacillales Enterococcaceae Enterococcus
80740-16S_rRNA contig_1 3455-5013 (-) Lactobacillales Enterococcaceae Enterococcus
80740-16S_rRNA contig_1 1213703-1215261 (+) Lactobacillales Enterococcaceae Enterococcus
80740-16S_rRNA contig_1 625352-626910 (+) Lactobacillales Enterococcaceae Enterococcus
80740-16S_rRNA contig_1 361524-363082 (-) Lactobacillales Enterococcaceae Enterococcus
80797-16S_rRNA contig_1 2627403-2628961 (-) Lactobacillales Enterococcaceae Enterococcus
80797-16S_rRNA contig_1 706467-708025 (+) Lactobacillales Enterococcaceae Enterococcus
80797-16S_rRNA contig_1 416-1974 (+) Lactobacillales Enterococcaceae Enterococcus
80797-16S_rRNA contig_1 2174760-2176318 (-) Lactobacillales Enterococcaceae Enterococcus
80798-16S_rRNA contig_4 787957-789515 (+) Lactobacillales Enterococcaceae Enterococcus
80798-16S_rRNA contig_4 2665903-2667461 (-) Lactobacillales Enterococcaceae Enterococcus
80798-16S_rRNA contig_4 2560971-2562529 (-) Lactobacillales Enterococcaceae Enterococcus
80798-16S_rRNA contig_4 2947132-2948690 (+) Lactobacillales Enterococcaceae Enterococcus
80829-16S_rRNA contig_1 2627400-2628958 (-) Lactobacillales Enterococcaceae Enterococcus
80829-16S_rRNA contig_1 706467-708025 (+) Lactobacillales Enterococcaceae Enterococcus
80829-16S_rRNA contig_1 416-1974 (+) Lactobacillales Enterococcaceae Enterococcus
80829-16S_rRNA contig_1 2174757-2176315 (-) Lactobacillales Enterococcaceae Enterococcus
80889-16S_rRNA contig_1 553852-555410 (-) Lactobacillales Enterococcaceae Enterococcus
80889-16S_rRNA contig_1 1278975-1280533 (+) Lactobacillales Enterococcaceae Enterococcus
80889-16S_rRNA contig_1 275230-276788 (-) Lactobacillales Enterococcaceae Enterococcus
80889-16S_rRNA contig_1 648806-650364 (-) Lactobacillales Enterococcaceae Enterococcus
80889-16S_rRNA contig_1 3567-5125 (-) Lactobacillales Enterococcaceae Enterococcus
80889-16S_rRNA contig_1 814904-816463 (-) Lactobacillales Enterococcaceae Enterococcus
81048-16S_rRNA contig_57 193201-194759 (+) Lactobacillales Enterococcaceae Enterococcus
81048-16S_rRNA contig_56 42429-43998 (+) Lactobacillales Enterococcaceae Enterococcus
81048-16S_rRNA contig_37 3364-4871 (-) Lactobacillales Carnobacteriaceae unclassified_Carnobacteriaceae
81314-16S_rRNA contig_1 273652-275210 (+) Lactobacillales Enterococcaceae Enterococcus
81314-16S_rRNA contig_1 654555-656113 (+) Lactobacillales Enterococcaceae Enterococcus
81314-16S_rRNA contig_1 4047-5605 (-) Lactobacillales Enterococcaceae Enterococcus
81314-16S_rRNA contig_1 2307337-2308895 (-) Lactobacillales Enterococcaceae Enterococcus
81378-16S_rRNA contig_1 1195636-1197194 (-) Lactobacillales Enterococcaceae Enterococcus
81378-16S_rRNA contig_1 1572051-1573608 (-) Lactobacillales Enterococcaceae Enterococcus
81378-16S_rRNA contig_1 1474158-1475716 (-) Lactobacillales Enterococcaceae Enterococcus
81378-16S_rRNA contig_1 145-1703 (+) Lactobacillales Enterococcaceae Enterococcus
81378-16S_rRNA contig_1 1812813-1814371 (-) Lactobacillales Enterococcaceae Enterococcus
81378-16S_rRNA contig_1 2255423-2256981 (+) Lactobacillales Enterococcaceae Enterococcus
81440-16S_rRNA contig_1 419-1977 (+) Lactobacillales Enterococcaceae Enterococcus
81440-16S_rRNA contig_1 367200-368758 (+) Lactobacillales Enterococcaceae Enterococcus
81440-16S_rRNA contig_1 1854321-1855879 (-) Lactobacillales Enterococcaceae Enterococcus
81440-16S_rRNA contig_1 2473939-2475497 (-) Lactobacillales Enterococcaceae Enterococcus
81456-16S_rRNA contig_1 2775317-2776875 (+) Lactobacillales Enterococcaceae Enterococcus
81456-16S_rRNA contig_1 2042604-2044162 (-) Lactobacillales Enterococcaceae Enterococcus
81456-16S_rRNA contig_1 2452217-2453775 (-) Lactobacillales Enterococcaceae Enterococcus
81456-16S_rRNA contig_1 531529-533087 (+) Lactobacillales Enterococcaceae Enterococcus
81863-16S_rRNA contig_1 718680-720238 (-) Lactobacillales Enterococcaceae Enterococcus
81863-16S_rRNA contig_2 495064-496622 (+) Lactobacillales Enterococcaceae Enterococcus
81863-16S_rRNA contig_1 294837-296395 (-) Lactobacillales Enterococcaceae Enterococcus
81863-16S_rRNA contig_1 998312-999870 (+) Lactobacillales Enterococcaceae Enterococcus
81956-16S_rRNA contig_1 619605-621163 (+) Lactobacillales Enterococcaceae Enterococcus
81956-16S_rRNA contig_1 362903-364461 (-) Lactobacillales Enterococcaceae Enterococcus
81956-16S_rRNA contig_1 2842359-2843917 (-) Lactobacillales Enterococcaceae Enterococcus
81956-16S_rRNA contig_1 1379360-1380918 (+) Lactobacillales Enterococcaceae Enterococcus
81958-16S_rRNA contig_7 1506984-1508542 (+) Lactobacillales Enterococcaceae Enterococcus
81958-16S_rRNA contig_7 1189548-1191106 (+) Lactobacillales Enterococcaceae Enterococcus
81958-16S_rRNA contig_7 1082554-1084112 (+) Lactobacillales Enterococcaceae Enterococcus
81958-16S_rRNA contig_7 808572-810130 (+) Lactobacillales Enterococcaceae Enterococcus
81958-16S_rRNA contig_7 1669779-1671337 (+) Lactobacillales Enterococcaceae Enterococcus
81958-16S_rRNA contig_7 329145-330703 (-) Lactobacillales Enterococcaceae Enterococcus
81958-16S_rRNA contig_16 56634-58192 (-) Lactobacillales Enterococcaceae Enterococcus
81958-16S_rRNA contig_4 364031-365589 (+) Lactobacillales Enterococcaceae Enterococcus
81958-16S_rRNA contig_6 45026-46584 (+) Lactobacillales Enterococcaceae Enterococcus
81973-16S_rRNA contig_2 2070533-2072091 (+) Lactobacillales Enterococcaceae Enterococcus
81973-16S_rRNA contig_2 2443337-2444895 (+) Lactobacillales Enterococcaceae Enterococcus
81973-16S_rRNA contig_2 1037260-1038818 (-) Lactobacillales Enterococcaceae Enterococcus
81973-16S_rRNA contig_2 1774094-1775652 (-) Lactobacillales Enterococcaceae Enterococcus
82126-16S_rRNA contig_5 483455-485013 (+) Lactobacillales Enterococcaceae Enterococcus
82126-16S_rRNA contig_5 51152-52710 (+) Lactobacillales Enterococcaceae Enterococcus
82126-16S_rRNA contig_5 158146-159704 (+) Lactobacillales Enterococcaceae Enterococcus
82126-16S_rRNA contig_3 145-1703 (+) Lactobacillales Enterococcaceae Enterococcus
82126-16S_rRNA contig_5 2674474-2676032 (+) Lactobacillales Enterococcaceae Enterococcus
82126-16S_rRNA contig_5 1660150-1661708 (-) Lactobacillales Enterococcaceae Enterococcus
82126-16S_rRNA contig_5 2190100-2191658 (-) Lactobacillales Enterococcaceae Enterococcus
82128-16S_rRNA contig_2 307-1865 (+) Lactobacillales Enterococcaceae Enterococcus
82128-16S_rRNA contig_2 815882-817440 (+) Lactobacillales Enterococcaceae Enterococcus
82128-16S_rRNA contig_2 2470870-2472428 (-) Lactobacillales Enterococcaceae Enterococcus
82128-16S_rRNA contig_2 2851773-2853331 (-) Lactobacillales Enterococcaceae Enterococcus
82591-16S_rRNA contig_1 1106016-1107573 (-) Lactobacillales Enterococcaceae Enterococcus
82591-16S_rRNA contig_1 1650475-1652032 (-) Lactobacillales Enterococcaceae Enterococcus
82591-16S_rRNA contig_1 2398725-2400282 (-) Lactobacillales Enterococcaceae Enterococcus
82591-16S_rRNA contig_1 2592920-2594477 (+) Lactobacillales Enterococcaceae Enterococcus
82591-16S_rRNA contig_1 2079725-2081281 (-) Lactobacillales Enterococcaceae Enterococcus
82961-16S_rRNA contig_4 1301072-1302630 (-) Lactobacillales Enterococcaceae Enterococcus
82961-16S_rRNA contig_13 392-1950 (+) Lactobacillales Enterococcaceae Enterococcus
82961-16S_rRNA contig_4 1618882-1620440 (-) Lactobacillales Enterococcaceae Enterococcus
82961-16S_rRNA contig_4 1726943-1728501 (-) Lactobacillales Enterococcaceae Enterococcus
82961-16S_rRNA contig_4 129249-130807 (+) Lactobacillales Enterococcaceae Enterococcus
82961-16S_rRNA contig_4 1961283-1962841 (-) Lactobacillales Enterococcaceae Enterococcus
82961-16S_rRNA contig_4 2450801-2452359 (+) Lactobacillales Enterococcaceae Enterococcus
84170-16S_rRNA contig_1 516902-518460 (-) Lactobacillales Enterococcaceae Enterococcus
84170-16S_rRNA contig_1 2730911-2732469 (-) Lactobacillales Enterococcaceae Enterococcus
84170-16S_rRNA contig_1 1044513-1046071 (+) Lactobacillales Enterococcaceae Enterococcus
84170-16S_rRNA contig_1 830872-832430 (+) Lactobacillales Enterococcaceae Enterococcus
85134-16S_rRNA contig_1 517077-518635 (-) Lactobacillales Enterococcaceae Enterococcus
85134-16S_rRNA contig_1 2743963-2745521 (-) Lactobacillales Enterococcaceae Enterococcus
85134-16S_rRNA contig_1 1043115-1044673 (+) Lactobacillales Enterococcaceae Enterococcus
85134-16S_rRNA contig_1 829472-831030 (+) Lactobacillales Enterococcaceae Enterococcus
85160-16S_rRNA contig_2 476070-477628 (+) Lactobacillales Enterococcaceae Enterococcus
85160-16S_rRNA contig_2 1405739-1407297 (+) Lactobacillales Enterococcaceae Enterococcus
85160-16S_rRNA contig_2 3106607-3108165 (-) Lactobacillales Enterococcaceae Enterococcus
85160-16S_rRNA contig_2 163674-165232 (-) Lactobacillales Enterococcaceae Enterococcus
85712-16S_rRNA contig_1 1527303-1528861 (+) Lactobacillales Enterococcaceae Enterococcus
85712-16S_rRNA contig_1 758201-759759 (-) Lactobacillales Enterococcaceae Enterococcus
85712-16S_rRNA contig_1 1252983-1254541 (-) Lactobacillales Enterococcaceae Enterococcus
85712-16S_rRNA contig_1 2137259-2138817 (+) Lactobacillales Enterococcaceae Enterococcus
86253-16S_rRNA contig_1 859545-861103 (-) Lactobacillales Enterococcaceae Enterococcus
86253-16S_rRNA contig_1 1503962-1505520 (+) Lactobacillales Enterococcaceae Enterococcus
86253-16S_rRNA contig_1 444765-446323 (-) Lactobacillales Enterococcaceae Enterococcus
86253-16S_rRNA contig_1 764595-766153 (-) Lactobacillales Enterococcaceae Enterococcus
86253-16S_rRNA contig_1 1037111-1038669 (-) Lactobacillales Enterococcaceae Enterococcus
86253-16S_rRNA contig_1 3568-5127 (-) Lactobacillales Enterococcaceae Enterococcus
86535-16S_rRNA contig_3 568232-569790 (+) Lactobacillales Enterococcaceae Enterococcus
86535-16S_rRNA contig_3 2767843-2769401 (-) Lactobacillales Enterococcaceae Enterococcus
86535-16S_rRNA contig_3 2351336-2352894 (-) Lactobacillales Enterococcaceae Enterococcus
86535-16S_rRNA contig_3 3047745-3049303 (+) Lactobacillales Enterococcaceae Enterococcus
barcode17-16S_rRNA contig_3 545732-547289 (+) Lactobacillales Enterococcaceae Enterococcus
barcode17-16S_rRNA contig_3 861245-862802 (+) Lactobacillales Enterococcaceae Enterococcus
barcode17-16S_rRNA contig_3 349996-351553 (-) Lactobacillales Enterococcaceae Enterococcus
barcode17-16S_rRNA contig_4 516710-518267 (-) Lactobacillales Enterococcaceae Enterococcus
barcode17-16S_rRNA contig_1 19058-20616 (+) Lactobacillales Enterococcaceae Enterococcus
barcode18-16S_rRNA contig_8 1028206-1029763 (+) Lactobacillales Enterococcaceae Enterococcus
barcode18-16S_rRNA contig_8 510833-512390 (-) Lactobacillales Enterococcaceae Enterococcus
barcode18-16S_rRNA contig_8 2727484-2729041 (-) Lactobacillales Enterococcaceae Enterococcus
barcode18-16S_rRNA contig_8 832467-834024 (-) Lactobacillales Enterococcaceae Enterococcus


Back to index

Multi-Locus Sequence Typing (MLST)

Further details can be found in mlst web page.

Symbol Meaning
~ novel full length allele similar to match
? partial match to known allele
- allele missing


Scheme ST 1 2 3 4 5 6 7
72855 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
72882 - -
72927 efaecalis - gdh(1) gyd(7) pstS(9) gki(5) aroE(1) xpt(1) yqiL(1)
73054 - -
73201 efaecalis - gdh(17) gyd(6) pstS(32) gki(5) aroE(3) xpt(1) yqiL(20)
73338 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
73611 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
74016 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
74089 efaecalis 19 gdh(1) gyd(2) pstS(12) gki(8) aroE(1) xpt(6) yqiL(1)
75125 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
75176 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
75411 efaecalis 179 gdh(5) gyd(1) pstS(1) gki(3) aroE(7) xpt(1) yqiL(6)
75520 efaecalis - gdh(95) gyd(6) pstS(12) gki(93) aroE(40) xpt(15) yqiL(91)
75582 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
75715 efaecalis 19 gdh(1) gyd(2) pstS(12) gki(8) aroE(1) xpt(6) yqiL(1)
75746 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
75840 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
76174 efaecium 1336 atpA(9) ddl(1) gdh(1) purK(1) gyd(12) pstS(1) adk(28)
76302 efaecalis 79 gdh(23) gyd(6) pstS(7) gki(25) aroE(24) xpt(2) yqiL(17)
76304 efaecalis 19 gdh(1) gyd(2) pstS(12) gki(8) aroE(1) xpt(6) yqiL(1)
76646 efaecalis 116 gdh(17) gyd(2) pstS(22) gki(1) aroE(14) xpt(14) yqiL(1)
76746 efaecalis 81 gdh(27) gyd(2) pstS(16) gki(28) aroE(26) xpt(2) yqiL(1)
76793 efaecalis - gdh(~9) gyd(6) pstS(7) gki(16) aroE(11) xpt(11) yqiL(8)
76952 efaecalis 30 gdh(7) gyd(1) pstS(11) gki(1) aroE(10) xpt(2) yqiL(1)
76967 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
76985 efaecalis 626 gdh(7) gyd(12) pstS(11) gki(1) aroE(10) xpt(2) yqiL(1)
77019 efaecalis 41 gdh(1) gyd(7) pstS(11) gki(21) aroE(1) xpt(4) yqiL(1)
77340 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
77364 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
77448 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
77566 efaecalis 21 gdh(1) gyd(7) pstS(9) gki(1) aroE(1) xpt(1) yqiL(1)
77655 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
77771 efaecalis 179 gdh(5) gyd(1) pstS(1) gki(3) aroE(7) xpt(1) yqiL(6)
77804 efaecalis 79 gdh(23) gyd(6) pstS(7) gki(25) aroE(24) xpt(2) yqiL(17)
78036 efaecalis 525 gdh(12) gyd(7) pstS(3) gki(32) aroE(6) xpt(26) yqiL(5)
78039 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
78041 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
78203 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
78272 efaecalis 528 gdh(8) gyd(2) pstS(15) gki(9) aroE(4) xpt(18) yqiL(1)
78438 efaecium 262 atpA(7) ddl(1) gdh(1) purK(1) gyd(5) pstS(7) adk(1)
78506 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
78507 efaecalis 202 gdh(1) gyd(7) pstS(9) gki(1) aroE(1) xpt(10) yqiL(1)
78555 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
78894 efaecium - atpA(15) ddl(1) gdh(1) purK(44) gyd(1) pstS(20) adk(28)
79576 efaecalis 525 gdh(12) gyd(7) pstS(3) gki(32) aroE(6) xpt(26) yqiL(5)
79578 efaecalis 249 gdh(15) gyd(1) pstS(18) gki(57) aroE(3) xpt(35) yqiL(53)
79579 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
79707 efaecalis - gdh(90) gyd(7) pstS(23) gki(32) aroE(39) xpt(20) yqiL(9?)
79867 efaecalis 387 gdh(9) gyd(6) pstS(7) gki(13) aroE(13) xpt(35) yqiL(8)
80213 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
80275 efaecalis 314 gdh(9) gyd(6) pstS(4) gki(49) aroE(11) xpt(15) yqiL(61)
80343 efaecalis 525 gdh(12) gyd(7) pstS(3) gki(32) aroE(6) xpt(26) yqiL(5)
80344 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
80411 efaecalis 308 gdh(3) gyd(7) pstS(11) gki(21) aroE(9) xpt(4) yqiL(7)
80564 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
80725 efaecium - atpA(9) ddl(3) gdh(1) purK(1) gyd(12) pstS(1) adk(28)
80740 efaecalis - gdh(~72) gyd(8) pstS(11) gki(33) aroE(6) xpt(2) yqiL(14)
80797 efaecalis 81 gdh(27) gyd(2) pstS(16) gki(28) aroE(26) xpt(2) yqiL(1)
80798 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
80829 efaecalis 81 gdh(27) gyd(2) pstS(16) gki(28) aroE(26) xpt(2) yqiL(1)
80889 efaecium 437 atpA(9) ddl(5) gdh(1) purK(3) gyd(1) pstS(20) adk(1)
81048 efaecalis - gdh(5) gyd(1) pstS(1) gki(48?) aroE(7) xpt(1) yqiL(-)
81314 efaecalis 525 gdh(12) gyd(7) pstS(3) gki(32) aroE(6) xpt(26) yqiL(5)
81378 efaecium 260 atpA(7) ddl(1) gdh(1) purK(1) gyd(12) pstS(7) adk(1)
81440 efaecalis 387 gdh(9) gyd(6) pstS(7) gki(13) aroE(13) xpt(35) yqiL(8)
81456 efaecalis 179 gdh(5) gyd(1) pstS(1) gki(3) aroE(7) xpt(1) yqiL(6)
81863 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
81956 efaecalis 16 gdh(5) gyd(1) pstS(1) gki(3) aroE(7) xpt(7) yqiL(6)
81958 efaecium - atpA(9,52) ddl(1) gdh(1) purK(1) gyd(12) pstS(11) adk(18,28)
81973 efaecalis 774 gdh(4) gyd(7) pstS(3) gki(3) aroE(8) xpt(1) yqiL(3)
82126 efaecium 1336 atpA(9) ddl(1) gdh(1) purK(1) gyd(12) pstS(1) adk(28)
82128 efaecalis 525 gdh(12) gyd(7) pstS(3) gki(32) aroE(6) xpt(26) yqiL(5)
82591 - -
82961 efaecium 1336 atpA(9) ddl(1) gdh(1) purK(1) gyd(12) pstS(1) adk(28)
84170 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
85134 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
85160 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
85712 efaecalis 628 gdh(3) gyd(1) pstS(23) gki(12) aroE(9) xpt(10) yqiL(7)
86253 efaecium 1282 atpA(7) ddl(1) gdh(1) purK(1) gyd(5) pstS(11) adk(1)
86535 efaecalis 6 gdh(12) gyd(7) pstS(3) gki(7) aroE(6) xpt(1) yqiL(5)
barcode17 - -
barcode18 - -
barcode19 - -


Back to index

Pangenome analysis

Pangenome genes summary

Genes Description Number
Core genes (99% <= strains <= 100%) 0
Soft core genes (95% <= strains < 99%) 10
Shell genes (15% <= strains < 95%) 6165
Cloud genes (0% <= strains < 15%) 14836
Total genes (0% <= strains <= 100%) 21011

Schematic representation of genes presence (color) or absence (blank) between ssamples:


Pangenome tree based on presence/absence of accesory genes representation

Rectangular (phylogram)

Circular (phylogram)

Rectangular (cladogram)

Circular (cladogram)


Back to index

Pangenome tree based on core genes alignment representation

Rectangular (phylogram)

Circular (phylogram)

Rectangular (cladogram)

Circular (cladogram)


Back to index

Antimicrobial resistance

The search of antimicrobial resistance genes was performed by screening the genome against Resfinder (E. Zankari et al., 2012), CARD (A.G. McArthur et al., 2013) and ARG-ANNOT (S.K. Gupta et al., 2014) databases by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing TORMES output directory.


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antimicrobial resistance gene
Gaps Gaps in subject (genome) and query (antimicrobial resistance gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antimicrobial resistance gene
Product Antimicrobial resistance gene product
Resistance Antimicrobial that the gene confers resistance to


Select the samples and the database

72855
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 355299 356738 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_5 17533 18441 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_5 19073 19867 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 27220 27867 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_3 11126 11863 erm(B)_12 0/0 100 100 U18931 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_5 13512 14274 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 1486285 1487781 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 6067 8673 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
contig_3 17143 19749 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 355299 356738 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_5 17611 18441 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_5 19073 19867 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_4 621893 622387 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_2 1533873 1534367 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_4 854677 855171 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_2 1320253 1321980 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 1322539 1323592 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_4 136798 137952 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 27220 27867 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_3 11118 11863 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_5 13537 14282 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 1486285 1487781 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_5 18438 18980 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 6681 7712 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_3 18104 19135 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_1 7705 8673 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_3 17143 18111 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_1 10020 10715 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_3 15101 15796 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_1 8888 10042 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_3 15774 16928 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_1 6067 6675 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_3 19141 19749 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_1 4729 5639 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_3 20177 21087 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_1 4091 4576 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
contig_3 21240 21725 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 355299 356738 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_5 17533 18441 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_5 19073 19867 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_5 18438 18980 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_1 6681 7712 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_3 18104 19135 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_1 7705 8673 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_3 17143 18111 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_1 10020 10715 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_3 15101 15796 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_1 8888 10042 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_3 15774 16928 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_1 6067 6675 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_3 19141 19749 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_1 4729 5639 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_3 20177 21087 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_1 4091 4576 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_3 21240 21725 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_3 11126 11863 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_5 13537 14274 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 1486285 1487781 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_4 991025 991858 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 27220 27867 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_4 621893 622387 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_2 1533873 1534367 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_4 854677 855171 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
72882
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 3310879 3312500 VanC2XY_5 0/0 100 99 EU151760 VanC2XY Vancomycin
CARD
## [1] "No antimicrobial resitance genes from CARD database were found"
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 3310879 3311931 (Gly)vanC2 0/0 100 99 L29638:33-1085 (Gly)vanC2 NA
contig_1 3314698 3315393 (Gly)vanRc3 0/0 100 99 AY033764:3846-4541 (Gly)vanRc3 NA
contig_1 3315455 3316513 (Gly)vanSc3 0/0 100 99 AY033764:4604-5662 (Gly)vanSc3 NA
contig_1 3312497 3314599 (Gly)vanTc3 0/0 100 98 AY033764:1644-3746 (Gly)vanTc3 NA
contig_1 3311928 3312500 (Gly)vanXYc2/3 0/0 100 99 EU151760:1078-1650 (Gly)vanXYc2/3 NA
72927
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2142567 2143475 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_1 2141203 2141997 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_1 837827 838324 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_1 1277529 1278026 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_1 2139716 2140478 erm(B)_18 1/1 100 100 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 2433902 2435398 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 14532 15874 tet(L)_2 0/0 98 100 M29725 tet(L) Doxycycline, Tetracycline
contig_1 12124 14043 tet(M)_2 0/0 100 98 X90939 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 732684 734603 tet(M)_4 0/0 100 100 X75073 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2142567 2143397 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_1 2141203 2141997 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1613926 1614420 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 837827 838324 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_1 1277529 1278026 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_1 2568943 2570670 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2567330 2568377 efrB 7/7 96 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2060124 2061278 emeA 1/27 98 98 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 2139708 2140453 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 2433902 2435398 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 14532 15874 tet(L) 0/0 98 100 M11036:0-1377 TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. tetracycline
contig_1 12124 14043 tetM 0/0 100 98 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 732684 734603 tetM 0/0 100 99 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2142567 2143475 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_1 2141203 2141997 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_1 2139716 2140453 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 2433902 2435398 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1310860 1311693 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 14532 15874 (Tet)tetL 0/0 98 100 FN435329:1-1377 (Tet)tetL NA
contig_1 12124 14043 (Tet)tetM 0/0 100 98 DQ534550:1451-3370 (Tet)tetM NA
contig_1 732684 734603 (Tet)tetM 0/0 100 100 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1613926 1614420 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
contig_1 837827 838324 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
contig_1 1277529 1278026 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
73054
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 19430 21051 VanC2XY_5 0/0 100 99 EU151760 VanC2XY Vancomycin
CARD
## [1] "No antimicrobial resitance genes from CARD database were found"
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 19430 20482 (Gly)vanC2 0/0 100 99 L29638:33-1085 (Gly)vanC2 NA
contig_1 23249 23944 (Gly)vanRc3 0/0 100 99 AY033764:3846-4541 (Gly)vanRc3 NA
contig_1 24006 25064 (Gly)vanSc3 0/0 100 99 AY033764:4604-5662 (Gly)vanSc3 NA
contig_1 21048 23150 (Gly)vanTc3 0/0 100 98 AY033764:1644-3746 (Gly)vanTc3 NA
contig_1 20479 21051 (Gly)vanXYc2/3 0/0 100 99 EU151760:1078-1650 (Gly)vanXYc2/3 NA
73201
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2298878 2300374 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1358941 1359435 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2431693 2433420 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2430081 2431134 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 918007 919161 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 2298878 2300374 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2298878 2300374 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1778694 1779527 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1358941 1359435 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
73338
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2731743 2733182 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_2 21471 22379 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_2 23011 23805 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_4 10182 10829 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_2 17450 18212 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 6037 6794 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 665171 666667 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 1139137 1141056 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_3 70564 73170 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2731743 2733182 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_2 21549 22379 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_2 23011 23805 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1761657 1762151 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 712759 713253 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 1528873 1529367 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 499140 500867 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 501426 502479 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2246092 2247246 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_4 10182 10829 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_2 17475 18220 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 6029 6774 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 665171 666667 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 22376 22918 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 1139137 1141056 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_3 71525 72556 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_3 70564 71532 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_3 68522 69217 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_3 69195 70349 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_3 72562 73170 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_3 73598 74508 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_3 74661 75146 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2731743 2733182 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_2 21471 22379 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_2 23011 23805 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 22376 22918 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_3 71525 72556 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_3 70564 71532 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_3 68522 69217 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_3 69195 70349 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_3 72562 73170 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_3 73598 74508 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_3 74661 75146 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_2 17475 18212 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 6037 6774 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 665171 666667 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1392172 1393005 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_4 10182 10829 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 1139137 1141056 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1761657 1762151 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 712759 713253 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_1 1528873 1529367 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
73611
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1309630 1310178 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_2 628258 628755 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_2 861206 862684 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1309630 1310178 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_2 628258 628755 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_2 124790 126076 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_2 861206 862684 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1309630 1310178 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_2 861206 862684 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_2 628258 628755 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
74016
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1790922 1791470 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_4 14690 15598 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_4 16230 17024 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_2 1071681 1072178 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_4 10669 11431 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 1303107 1304585 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 26000 28606 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1790922 1791470 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_4 14768 15598 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_4 16230 17024 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_2 1071681 1072178 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_2 567772 569058 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_4 10694 11439 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 1303107 1304585 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_4 15595 16137 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_4 26961 27992 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_4 26000 26968 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_4 22451 23146 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_4 23124 24278 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_4 27998 28606 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_4 30372 30857 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1790922 1791470 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_4 14690 15598 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_4 16230 17024 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_4 15595 16137 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_4 26961 27992 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_4 26000 26968 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_4 22451 23146 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_4 23124 24278 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_4 27998 28606 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_4 30372 30857 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_4 10694 11431 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 1303107 1304585 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_2 1071681 1072178 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
74089
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 2897 3805 ant(6)-Ia_1 0/0 100 99 AF330699 ant(6)-Ia Streptomycin
contig_3 1471 2265 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 67552 68199 cat_5 0/0 100 99 U35036 cat Chloramphenicol
contig_3 81010 81495 dfrG_1 0/0 98 100 AB205645 dfrG Trimethoprim
contig_3 20218 20811 erm(A)_3 0/0 100 100 EU348758 erm(A) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 1 746 erm(B)_18 1/1 98 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 4110 4872 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 76303 77065 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 14674 16101 fexA_1 0/0 100 100 AJ549214 fexA Chloramphenicol, Florfenicol
contig_1 1332177 1333673 lsa(A)_3 0/0 100 98 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_3 16789 18756 optrA_4 0/0 100 100 KT862777 optrA Linezolid, Chloramphenicol, Florfenicol
contig_3 36074 36922 str_2 0/0 100 100 FN435330 str Streptomycin
contig_3 65134 66510 tet(L)_2 0/0 100 96 M29725 tet(L) Doxycycline, Tetracycline
contig_3 63016 64935 tet(M)_1 0/0 100 98 X92947 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 461017 462936 tet(M)_4 0/0 100 100 X75073 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 2897 3727 aad(6) 0/0 100 99 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_3 1471 2265 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_3 67552 68199 catA8 0/0 100 99 JQ922409.1:92-740 catA8 is a chloramphenicol acetyltransferase that confers resistance to chloramphenicol. phenicol
contig_1 2197046 2197540 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_3 81010 81495 dfrG 0/0 98 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_1 1199020 1200747 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1201306 1202360 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2645867 2647021 emeA 1/27 98 98 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 1 721 ErmB 0/0 97 100 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 4102 4847 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 76328 77073 ErmB 1/1 100 100 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 14674 16101 fexA 0/0 100 100 AJ549214:176-1604 fexA is a plasmid-encoded chloramphenicol exporter that is found in Staphylococcus lentus phenicol
contig_1 1332177 1333673 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 16789 18756 optrA 0/0 100 100 KP399637:31476-33444 OptrA is a member of the ABC-F protein subfamily that confers resistance to oxazolidinones. The gene encoding the protein was originally isolated from a plasmid in Enterococcus faecalis and Enterococcus faecium. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 2358 2900 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_3 65134 66510 tet(L) 0/0 100 96 M11036:0-1377 TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. tetracycline
contig_1 461017 462936 tetM 0/0 100 99 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_3 63016 64935 tetM 0/0 100 98 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 2897 3805 (AGly)ant6-Ia 0/0 100 99 AF330699:22-930 (AGly)ant6-Ia NA
contig_3 1471 2265 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_3 2358 2900 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_3 36074 36922 (AGly)str 0/0 100 100 X92946:18908-18060 (AGly)str NA
contig_3 1 721 (MLS)erm(B) 0/0 98 99 M11180:714-1451 (MLS)erm(B) NA
contig_3 4110 4847 (MLS)erm(B) 0/0 100 99 M11180:714-1451 (MLS)erm(B) NA
contig_3 76328 77065 (MLS)erm(B) 0/0 100 99 M11180:714-1451 (MLS)erm(B) NA
contig_1 1332177 1333673 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1890460 1891293 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 16789 18756 (Oxzln)OptrA_4 0/0 100 100 KX620940:1-1968 (Oxzln)OptrA_4 NA
contig_3 67552 68199 (Phe)catA8 0/0 100 99 NC_009751:21916-22563 (Phe)catA8 NA
contig_3 14674 16101 (Phe)fexA 0/0 100 100 JQ041372:14024-15451 (Phe)fexA NA
contig_3 65134 66510 (Tet)tetL 0/0 100 96 FN435329:1-1377 (Tet)tetL NA
contig_1 461017 462936 (Tet)tetM 0/0 100 100 DQ534550:1451-3370 (Tet)tetM NA
contig_3 63016 64935 (Tet)tetM 0/0 100 98 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2197046 2197540 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
contig_3 81010 81495 (Tmt)dfrG 0/0 98 100 AB205645:1013-1510 (Tmt)dfrG NA
75125
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 95186 96496 aac(6’)-aph(2’’)_1 0/0 91 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_3 2781778 2782326 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_19 10843 11751 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_19 12383 13177 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 2101929 2102426 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_19 6822 7584 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 2334877 2336355 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 95186 96496 AAC(6’)-Ie-APH(2’’)-Ia 0/0 91 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_3 2781778 2782326 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_19 10921 11751 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_19 12383 13177 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_3 2101929 2102426 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_3 1598460 1599746 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_19 6847 7592 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 2334877 2336355 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_19 11748 12290 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_19 19477 19962 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 95186 96496 (AGly)aac6-Aph2 0/0 91 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_3 2781778 2782326 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_19 10843 11751 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_19 12383 13177 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_19 11748 12290 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_19 19477 19962 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_19 6847 7584 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 2334877 2336355 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_3 2101929 2102426 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
75176
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1884801 1885349 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_8 14123 15031 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_8 12697 13491 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_1 1206474 1206971 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_8 18290 19052 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1437900 1439378 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_8 1115 3721 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1884801 1885349 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_8 14123 14953 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_8 12697 13491 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1206474 1206971 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_1 702244 703530 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_8 18282 19027 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 1437900 1439378 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_8 13584 14126 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_8 1729 2760 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_8 2753 3721 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_8 6575 7270 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_8 5443 6597 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_8 1115 1723 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_8 31308 31793 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1884801 1885349 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_8 14123 15031 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_8 12697 13491 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_8 13584 14126 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_8 1729 2760 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_8 2753 3721 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_8 6575 7270 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_8 5443 6597 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_8 1115 1723 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_8 31308 31793 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_8 18290 19027 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1437900 1439378 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_1 1206474 1206971 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
75411
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1124361 1125123 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1966362 1967858 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 474076 475995 tet(M)_10 0/0 100 100 EU182585 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1040008 1040502 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2098904 2100631 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2097292 2098345 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 598172 599326 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 1124353 1125098 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 1966362 1967858 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 474076 475995 tetM 0/0 100 94 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1124361 1125098 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1966362 1967858 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1390024 1390857 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 474076 475995 (Tet)tetM 0/0 100 94 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1040008 1040502 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
75520
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1029691 1031187 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1860825 1861319 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 896509 898236 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 898795 899848 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2314164 2315318 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 1029691 1031187 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1029691 1031187 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1517204 1518037 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1860825 1861319 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
75582
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2157483 2158922 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_2 64603 65511 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_2 63177 63971 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 12227 12874 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_3 30647 31294 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_2 292 1054 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 8098 8851 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 26518 27271 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 139131 140627 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 2827320 2829239 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 3142235 3144154 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2157483 2158922 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_2 64603 65433 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_2 63177 63971 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1226410 1226904 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 226170 226664 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 994956 995450 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 3124795 3126522 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 3127081 3128134 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1712460 1713614 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 12227 12874 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_3 30647 31294 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_2 284 1029 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 8090 8835 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 26510 27255 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 139131 140627 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 64064 64606 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 2827320 2829239 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 3142235 3144154 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2157483 2158922 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_2 64603 65511 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_2 63177 63971 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 64064 64606 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_2 292 1029 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 8098 8835 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 26518 27255 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 139131 140627 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 858315 859148 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 12227 12874 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_3 30647 31294 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 2827320 2829239 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 3142235 3144154 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1226410 1226904 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 226170 226664 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_1 994956 995450 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
75715
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 608485 609981 lsa(A)_3 0/0 100 98 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 1441463 1443382 tet(M)_4 0/0 100 100 X75073 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2603236 2603730 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 741411 743138 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 739798 740852 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2153755 2154909 emeA 1/27 98 98 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 608485 609981 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 1441463 1443382 tetM 0/0 100 99 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 608485 609981 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 48332 49165 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1441463 1443382 (Tet)tetM 0/0 100 100 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2603236 2603730 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
75746
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_9 1215790 1216338 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_16 1539 2447 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_16 113 907 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_9 1894168 1894665 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_16 5706 6468 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_9 1661761 1663239 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_16 20116 22722 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_9 1215790 1216338 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_16 1539 2369 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_16 113 907 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_9 1894168 1894665 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_9 2397218 2398504 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_16 5698 6443 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_9 1661761 1663239 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_16 1000 1542 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_16 20730 21761 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_16 21754 22722 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_16 25576 26271 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_16 24444 25598 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_16 20116 20724 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_16 17865 18350 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_9 1215790 1216338 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_16 1539 2447 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_16 113 907 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_16 1000 1542 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_16 20730 21761 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_16 21754 22722 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_16 25576 26271 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_16 24444 25598 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_16 20116 20724 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_16 17865 18350 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_16 5706 6443 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_9 1661761 1663239 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_9 1894168 1894665 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
75840
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 28754 30193 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_7 61902 62810 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_7 60476 61270 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_7 66069 66831 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 2063840 2065336 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 2230229 2232157 tet(M)_13 16/19 100 98 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 2556421 2558340 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_7 24248 26854 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 28754 30193 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_7 61902 62732 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_7 60476 61270 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 999785 1000279 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 1232570 1233064 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 2017323 2017817 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 2247873 2249600 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2246259 2247314 efrB 7/8 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 514691 515845 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_7 66061 66806 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 2063840 2065336 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_7 61363 61905 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 2230229 2232157 tetM 16/19 100 98 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 2556421 2558340 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_7 25209 26240 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_7 24248 25216 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_7 22206 22901 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_7 22879 24033 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_7 26246 26854 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_7 27282 28192 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_7 28345 28830 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 28754 30193 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_7 61902 62810 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_7 60476 61270 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_7 61363 61905 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_7 25209 26240 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_7 24248 25216 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_7 22206 22901 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_7 22879 24033 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_7 26246 26854 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_7 27282 28192 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_7 28345 28830 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_7 66069 66806 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 2063840 2065336 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1367058 1367891 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 2230229 2232157 (Tet)tetM 16/19 100 98 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2556421 2558340 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 999785 1000279 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 1232570 1233064 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_1 2017323 2017817 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
76174
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_7 672497 673045 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_20 14168 15080 ant(6)-Ia_1 1/4 100 100 AF330699 ant(6)-Ia Streptomycin
contig_20 12742 13536 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_7 1384256 1384753 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_20 18339 19101 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_7 1118924 1120402 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_20 30614 33063 VanHAX_2 0/0 94 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_7 672497 673045 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_20 14168 14998 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_20 12742 13536 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_7 1384256 1384753 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_7 1873550 1874836 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_20 18331 19076 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_7 1118924 1120402 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_20 13629 14171 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_20 31228 32259 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_20 2650 3345 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_20 1518 2672 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_20 30614 31222 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_7 672497 673045 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_20 14168 15080 (AGly)ant6-Ia 1/4 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_20 12742 13536 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_20 13629 14171 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_20 31228 32259 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_20 2650 3345 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_20 1518 2672 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_20 30614 31222 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_20 18339 19076 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_7 1118924 1120402 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_7 1384256 1384753 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
76302
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 395342 396838 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1341822 1342316 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 263966 265693 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 266252 267305 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1820116 1821270 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 395342 396838 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 395342 396838 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 997522 998355 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1341822 1342316 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
76304
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1065916 1067412 lsa(A)_3 0/0 100 98 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 229465 231384 tet(M)_4 0/0 100 100 X75073 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1934909 1935403 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 932758 934485 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 935044 936098 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2382226 2383380 emeA 1/27 98 98 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 1065916 1067412 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 229465 231384 tetM 0/0 100 99 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1065916 1067412 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1624206 1625039 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 229465 231384 (Tet)tetM 0/0 100 100 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1934909 1935403 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
76646
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1940942 1941439 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_2 93075 93572 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_2 9219 9981 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1406760 1408256 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 201016 202935 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2310944 2311438 dfrE 0/0 100 100 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 1940942 1941439 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_2 93075 93572 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_1 1273048 1274775 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1275334 1276387 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2749218 2750372 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_2 9211 9956 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 1406760 1408256 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 201016 202935 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 9219 9956 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1406760 1408256 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1976366 1977199 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 201016 202935 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2310944 2311438 (Tmt)dfrE 0/0 100 100 NG_055770:101-595 (Tmt)dfrE NA
contig_1 1940942 1941439 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
contig_2 93075 93572 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
76746
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2070259 2071755 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1192550 1193044 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2241489 2243216 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2239877 2240930 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 741520 742674 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 2070259 2071755 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2070259 2071755 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1521307 1522140 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1192550 1193044 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
76793
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2515245 2516741 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1658348 1658842 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2650580 2652307 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2648968 2650021 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1228097 1229251 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 2515245 2516741 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2515245 2516741 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1982256 1983089 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1658348 1658842 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
76952
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2442203 2443699 lsa(A)_1 0/0 100 100 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 1158650 1160590 tet(S)_3 0/0 100 100 X92946 tet(S) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1541653 1542147 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2577387 2579114 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2575775 2576828 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1061108 1062262 emeA 1/27 98 98 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 2442203 2443699 lsaA 0/0 100 100 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 1158650 1160575 tetS 0/0 100 100 L09756:0-1926 Tet(S) is a ribosomal protection protein found in Gram-positive and Gram-negative strains. It is similar to tet(M) and tet(O). tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2442203 2443699 (MLS)lsa(A) 0/0 100 100 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1882854 1883687 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1158650 1160575 (Tet)tetS 0/0 100 100 L09756:447-2372 (Tet)tetS NA
contig_1 1541653 1542147 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
76967
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 1618776 1619324 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_22 10546 11454 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_22 12086 12880 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 2297154 2297651 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_22 6525 7287 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 2064747 2066225 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 1618776 1619324 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_22 10624 11454 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_22 12086 12880 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_3 2297154 2297651 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_3 2798769 2800055 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_22 6550 7295 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 2064747 2066225 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_22 11451 11993 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 1618776 1619324 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_22 10546 11454 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_22 12086 12880 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_22 11451 11993 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_22 6550 7287 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 2064747 2066225 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_3 2297154 2297651 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
76985
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1916285 1917781 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 669287 671227 tet(S)_3 0/0 100 100 X92946 tet(S) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1050669 1051163 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2051252 2052979 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2049640 2050693 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 571746 572900 emeA 1/27 98 98 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 1916285 1917781 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 669287 671212 tetS 0/0 100 100 L09756:0-1926 Tet(S) is a ribosomal protection protein found in Gram-positive and Gram-negative strains. It is similar to tet(M) and tet(O). tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1916285 1917781 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1390299 1391132 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 669287 671212 (Tet)tetS 0/0 100 100 L09756:447-2372 (Tet)tetS NA
contig_1 1050669 1051163 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
77019
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1959113 1960609 lsa(A)_3 0/0 100 100 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 2490928 2492847 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 977511 978005 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2092430 2094157 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2090818 2091871 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 529271 530425 emeA 1/27 98 98 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 1959113 1960609 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 2490928 2492847 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1959113 1960609 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1316644 1317477 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 2490928 2492847 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 977511 978005 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
77340
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 68436 69746 aac(6’)-aph(2’’)_1 0/0 91 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_10 2405437 2405985 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_7 18212 19120 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_7 16786 17580 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_10 1722533 1723030 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_7 22379 23141 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_10 1953958 1955436 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_7 5204 7810 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 68436 69746 AAC(6’)-Ie-APH(2’’)-Ia 0/0 91 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_10 2405437 2405985 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_7 18212 19042 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_7 16786 17580 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_10 1722533 1723030 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_10 1215203 1216489 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_7 22371 23116 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_10 1953958 1955436 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_7 17673 18215 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_7 5818 6849 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_7 6842 7810 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_7 10664 11359 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_7 9532 10686 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_7 5204 5812 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_7 2953 3438 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 68436 69746 (AGly)aac6-Aph2 0/0 91 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_10 2405437 2405985 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_7 18212 19120 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_7 16786 17580 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_7 17673 18215 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_7 5818 6849 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_7 6842 7810 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_7 10664 11359 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_7 9532 10686 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_7 5204 5812 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_7 2953 3438 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_7 22379 23116 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_10 1953958 1955436 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_10 1722533 1723030 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
77364
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2091078 2092517 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_2 21044 21952 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_2 22584 23378 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_5 4202 4849 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_2 17023 17785 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_5 73 826 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 73760 75256 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 2759350 2761269 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 3074266 3076185 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2091078 2092517 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_2 21122 21952 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_2 22584 23378 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1160004 1160498 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 160799 161293 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 928550 929044 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 3056826 3058553 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 3059112 3060165 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1644723 1645877 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_5 4202 4849 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_2 17048 17793 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_5 65 810 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 73760 75256 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 21949 22491 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 2759350 2761269 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 3074266 3076185 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2091078 2092517 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_2 21044 21952 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_2 22584 23378 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 21949 22491 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_2 17048 17785 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_5 73 810 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 73760 75256 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 791909 792742 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_5 4202 4849 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 2759350 2761269 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 3074266 3076185 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1160004 1160498 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 160799 161293 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_1 928550 929044 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
77448
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 109545 110855 aac(6’)-aph(2’’)_1 0/0 91 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_2 1457460 1458008 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_20 10197 11105 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_20 8771 9565 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_2 774610 775107 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_20 14364 15126 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 1006035 1007513 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_20 29633 32239 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 109545 110855 AAC(6’)-Ie-APH(2’’)-Ia 0/0 91 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_2 1457460 1458008 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_20 10197 11027 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_20 8771 9565 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_2 774610 775107 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_2 267279 268565 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_20 14356 15101 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 1006035 1007513 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_20 9658 10200 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_20 30247 31278 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_20 31271 32239 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_20 2649 3344 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_20 1517 2671 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_20 29633 30241 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_20 27382 27867 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 109545 110855 (AGly)aac6-Aph2 0/0 91 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_2 1457460 1458008 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_20 10197 11105 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_20 8771 9565 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_20 9658 10200 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_20 30247 31278 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_20 31271 32239 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_20 2649 3344 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_20 1517 2671 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_20 29633 30241 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_20 27382 27867 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_20 14364 15101 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 1006035 1007513 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_2 774610 775107 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
77566
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 463887 464795 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_4 465365 466159 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_4 466884 467646 erm(B)_18 1/1 100 100 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 170780 172276 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_3 3990 5909 tet(M)_4 0/0 100 100 X75073 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 463965 464795 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_4 465365 466159 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_4 1089824 1090318 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_4 35322 37049 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_4 37608 38661 efrB 4/4 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_4 1537092 1538246 emeA 1/27 98 98 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_4 466909 467654 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 170780 172276 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 3990 5909 tetM 0/0 100 99 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 463887 464795 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_4 465365 466159 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_4 466909 467646 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 170780 172276 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_4 786758 787591 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 3990 5909 (Tet)tetM 0/0 100 100 DQ534550:1451-3370 (Tet)tetM NA
contig_4 1089824 1090318 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
77655
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 300922 302361 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_17 25823 26470 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_17 21814 22551 erm(B)_12 0/0 100 100 U18931 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_25 68009 69505 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 300922 302361 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_1 13379 13873 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 246165 246660 dfrF 1/1 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_8 42168 42662 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_6 24631 26358 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_6 23019 24072 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_7 22190 23344 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_17 25823 26470 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_17 21806 22551 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_25 68009 69505 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 300922 302361 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_17 21814 22551 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_25 68009 69505 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 382495 383328 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_17 25823 26470 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 13379 13873 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 246165 246660 (Tmt)dfrF 1/1 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_8 42168 42662 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
77771
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 1409188 1410627 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_3 1406795 1407589 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 1400742 1401504 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 1411454 1412216 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 2250387 2251883 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_3 750434 752353 tet(M)_10 0/0 100 100 EU182585 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 1409188 1410627 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_3 1408221 1409020 aad(6) 0/0 96 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_3 1406795 1407589 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_3 1316342 1316836 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_3 2382930 2384657 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_3 2381318 2382371 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_3 874529 875683 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 1400734 1401479 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 1411446 1412191 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 2250387 2251883 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 1407682 1408224 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_3 750434 752353 tetM 0/0 100 94 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 1409188 1410627 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_3 1406795 1407589 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_3 1407682 1408224 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_3 1400742 1401479 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 1411454 1412191 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 2250387 2251883 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_3 1675761 1676594 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 750434 752353 (Tet)tetM 0/0 100 94 DQ534550:1451-3370 (Tet)tetM NA
contig_3 1316342 1316836 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
77804
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1950784 1952280 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1039035 1039529 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2081929 2083656 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2080317 2081370 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 548347 549501 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 1950784 1952280 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1950784 1952280 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1350464 1351297 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1039035 1039529 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
78036
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 105445 106884 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_3 8854 9501 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_4 40921 41568 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_4 68445 69207 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 91390 92152 erm(B)_18 1/1 100 100 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 2829445 2830941 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 2963667 2965586 tet(M)_1 0/0 100 100 X92947 tet(M) Doxycycline, Tetracycline, Minocycline
contig_2 50912 53518 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 105445 106884 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_1 1830854 1831348 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2063524 2064018 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 2981157 2982884 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2979545 2980598 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1350022 1351175 emeA 2/28 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 8854 9501 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_4 40921 41568 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_4 68437 69182 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 91382 92127 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 2829445 2830941 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 2963667 2965586 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_2 51526 52557 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_2 52550 53518 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_2 54865 55560 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_2 53733 54887 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_2 50912 51520 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_2 49574 50484 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_2 48936 49421 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 105445 106884 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_2 51526 52557 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_2 52550 53518 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_2 54865 55560 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_2 53733 54887 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_2 50912 51520 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_2 49574 50484 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_2 48936 49421 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_4 68445 69182 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 91390 92127 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 2829445 2830941 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 2198822 2199655 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 8854 9501 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_4 40921 41568 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 2963667 2965586 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1830854 1831348 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 2063524 2064018 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
78039
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_6 54382 55692 aac(6’)-aph(2’’)_1 0/0 91 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_8 1959336 1959884 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_12 16494 17402 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_12 15068 15862 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_8 2642858 2643355 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_12 2035 2797 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_8 2410452 2411930 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_6 54382 55692 AAC(6’)-Ie-APH(2’’)-Ia 0/0 91 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_8 1959336 1959884 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_12 16494 17324 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_12 15068 15862 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_8 2642858 2643355 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_8 307220 308506 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_12 2027 2772 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_8 2410452 2411930 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_12 15955 16497 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_6 54382 55692 (AGly)aac6-Aph2 0/0 91 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_8 1959336 1959884 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_12 16494 17402 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_12 15068 15862 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_12 15955 16497 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_12 2035 2772 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_8 2410452 2411930 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_8 2642858 2643355 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
78041
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 226623 227171 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_12 3030 3938 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_19 8393 9301 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_19 27019 27927 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_12 1604 2398 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_19 9933 10727 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_19 28559 29353 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_2 2366722 2367219 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_12 7197 7959 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_19 4372 5134 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_19 22998 23760 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 2598147 2599625 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 226623 227171 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_12 3030 3860 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_19 8471 9301 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_19 27097 27927 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_12 1604 2398 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_19 9933 10727 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_19 28559 29353 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_2 2366722 2367219 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_2 1864390 1865676 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_12 7189 7934 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_19 4397 5142 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_19 23023 23768 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 2598147 2599625 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_12 2491 3033 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_19 9298 9840 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_19 27924 28466 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 226623 227171 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_12 3030 3938 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_19 8393 9301 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_19 27019 27927 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_12 1604 2398 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_19 9933 10727 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_19 28559 29353 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_12 2491 3033 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_19 9298 9840 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_19 27924 28466 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_12 7197 7934 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_19 4397 5134 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_19 23023 23760 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 2598147 2599625 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_2 2366722 2367219 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
78203
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 425538 426086 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_16 22106 23014 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_16 20680 21474 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_4 1108026 1108523 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_16 26273 27035 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 874554 876032 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_16 9098 11704 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 425538 426086 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_16 22106 22936 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_16 20680 21474 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_4 1108026 1108523 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_4 1615390 1616676 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_16 26265 27010 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 874554 876032 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_16 21567 22109 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_16 9712 10743 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_16 10736 11704 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_16 14558 15253 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_16 13426 14580 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_16 9098 9706 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_16 6847 7332 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 425538 426086 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_16 22106 23014 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_16 20680 21474 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_16 21567 22109 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_16 9712 10743 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_16 10736 11704 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_16 14558 15253 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_16 13426 14580 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_16 9098 9706 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_16 6847 7332 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_16 26273 27010 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 874554 876032 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_4 1108026 1108523 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
78272
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_9 51086 51880 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_14 352025 352522 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_9 48749 49246 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_15 26079 26841 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_9 51884 52646 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_14 2061482 2062285 lnu(G)_1 0/0 100 100 KX470419 lnu(G) Lincomycin
contig_14 1925341 1926837 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_9 51086 51880 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_14 1027773 1028267 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_14 352025 352522 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_9 48749 49246 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_14 2056203 2057930 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_14 2054590 2055644 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_14 593993 595147 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_15 26071 26816 ErmB 1/1 100 100 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_9 51886 52621 ErmB 0/0 99 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_14 2061482 2062285 lnuG 0/0 100 100 KX470419.1:3811-4615 lnuG is a transposon-mediated lincosamide nucleotidyltransferase found in Enterococcus faecalis on Tn6260. lincosamide
contig_14 1925341 1926837 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_9 51086 51880 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_15 26079 26816 (MLS)erm(B) 0/0 100 99 M11180:714-1451 (MLS)erm(B) NA
contig_9 51884 52621 (MLS)erm(B) 0/0 100 99 M11180:714-1451 (MLS)erm(B) NA
contig_14 1925341 1926837 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_14 1351092 1351925 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_14 1027773 1028267 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_14 352025 352522 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
contig_9 48749 49246 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
78438
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 482339 482887 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_2 149289 150197 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_2 159608 160513 aph(2’’)-Id_1 0/0 100 100 AF016483 aph(2’’)-Id Amikacin, Gentamicin, Tobramycin
contig_2 147863 148657 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_1 897089 897586 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_2 146376 147138 erm(B)_18 1/1 100 100 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 153705 154508 lnu(B)_2 0/0 100 100 JQ861959 lnu(B) Lincomycin, Clindamycin
contig_2 154562 156046 lsa(E)_1 0/0 100 100 JX560992 lsa(E) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M, Tiamulin
contig_1 92840 94318 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 2442097 2443439 tet(L)_2 0/0 98 100 M29725 tet(L) Doxycycline, Tetracycline
contig_1 2443568 2445487 tet(M)_10 0/0 100 98 EU182585 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 482339 482887 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_2 149289 150119 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_2 159608 160513 APH(2’’)-IVa 0/0 100 100 AF016483:0-906 APH(2’’)-IVa is a chromosomal-encoded aminoglycoside phosphotransferase in E. casseliflavus aminoglycoside
contig_2 147863 148657 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 897089 897586 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_1 2118031 2119317 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_2 146368 147113 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 153705 154508 lsaE 0/0 100 100 AF408195.1:9446-10250 lsaE is an ABC-F subfamily protein found in porcine MRSA isolates. It confers resistance to pleuromutilin lincosamide and streptogramin A lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 92840 94318 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 148750 149292 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 2442097 2443439 tet(L) 0/0 98 100 M11036:0-1377 TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. tetracycline
contig_1 2443568 2445487 tetM 0/0 100 96 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 482339 482887 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_2 149289 150197 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_2 159608 160513 (AGly)aph(2’’)-Id 0/0 100 100 AF016483:131-1036 (AGly)aph(2’’)-Id NA
contig_2 147863 148657 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 148750 149292 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_2 146376 147113 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 153705 154508 (MLS)lnu((B) 0/0 100 100 KC688833:1-804 (MLS)lnu((B) NA
contig_1 92840 94318 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_1 2442097 2443439 (Tet)tetL 0/0 98 100 FN435329:1-1377 (Tet)tetL NA
contig_1 2443568 2445487 (Tet)tetM 0/0 100 97 DQ534550:1451-3370 (Tet)tetM NA
contig_1 897089 897586 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
78506
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 3109997 3111436 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_3 64383 65291 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_3 62957 63751 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_4 2484 3131 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_3 72 834 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 16775 17528 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 1054278 1055774 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_2 570612 572531 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_2 886860 888779 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 3109997 3111436 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_3 64383 65213 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_3 62957 63751 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_2 2141558 2142052 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_2 1141317 1141811 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_2 1910104 1910598 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_2 869420 871147 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 871706 872759 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 2626277 2627431 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_4 2484 3131 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_3 64 809 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 16767 17512 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 1054278 1055774 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 63844 64386 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_2 570612 572531 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_2 886860 888779 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 3109997 3111436 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_3 64383 65291 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_3 62957 63751 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_3 63844 64386 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_3 72 809 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 16775 17512 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 1054278 1055774 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_2 1773463 1774296 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_4 2484 3131 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_2 570612 572531 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 886860 888779 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 2141558 2142052 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_2 1141317 1141811 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_2 1910104 1910598 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
78507
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 81584 82492 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_2 83124 83918 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_2 603 1365 erm(B)_18 1/1 100 100 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 62851 63613 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 2650943 2652439 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_2 13950 15326 tet(L)_2 0/0 100 100 M29725 tet(L) Doxycycline, Tetracycline
contig_2 15520 17439 tet(M)_10 0/0 100 96 EU182585 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 81662 82492 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_2 83124 83918 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1739479 1739973 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 30063 31790 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 28451 29504 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1292699 1293853 emeA 1/27 98 98 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_2 628 1373 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 62843 63588 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 2650943 2652439 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 82489 83031 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_2 13950 15326 tet(L) 0/0 100 100 M11036:0-1377 TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. tetracycline
contig_2 15520 17439 tetM 0/0 100 95 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 81584 82492 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_2 83124 83918 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 82489 83031 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_2 628 1365 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 62851 63588 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 2650943 2652439 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 2071219 2072052 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_2 13950 15326 (Tet)tetL 0/0 100 100 FN435329:1-1377 (Tet)tetL NA
contig_2 15520 17439 (Tet)tetM 0/0 100 96 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1739479 1739973 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
78555
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 1801101 1801649 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_10 22108 23016 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_10 20682 21476 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 1118664 1119161 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_10 26275 27037 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 1351155 1352633 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_10 9099 11705 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 1801101 1801649 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_10 22108 22938 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_10 20682 21476 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_3 1118664 1119161 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_3 610511 611797 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_10 26267 27012 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 1351155 1352633 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_10 21569 22111 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_10 9713 10744 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_10 10737 11705 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_10 14559 15254 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_10 13427 14581 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_10 9099 9707 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_10 6848 7333 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 1801101 1801649 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_10 22108 23016 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_10 20682 21476 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_10 21569 22111 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_10 9713 10744 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_10 10737 11705 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_10 14559 15254 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_10 13427 14581 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_10 9099 9707 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_10 6848 7333 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_10 26275 27012 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 1351155 1352633 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_3 1118664 1119161 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
78894
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 2640208 2640756 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_9 9022 9930 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_9 10562 11356 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_2 486550 487047 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_9 5001 5763 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 254144 255622 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 2640208 2640756 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_9 9100 9930 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_9 10562 11356 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_2 486550 487047 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_2 992972 994258 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_9 5026 5771 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 254144 255622 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_9 9927 10469 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 2640208 2640756 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_9 9022 9930 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_9 10562 11356 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_9 9927 10469 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_9 5026 5763 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 254144 255622 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_2 486550 487047 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
79576
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 54755 56194 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_4 32516 33163 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_4 15679 16441 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 2238960 2240456 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_2 2408162 2410081 tet(M)_1 0/0 100 100 X92947 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 50913 53519 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 54755 56194 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_2 1119389 1119883 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_2 1352059 1352553 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_2 2425652 2427379 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 2424040 2425093 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 637222 638376 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_4 32516 33163 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_4 15671 16416 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 2238960 2240456 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 2408162 2410081 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 51527 52558 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_1 52551 53519 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_1 54866 55561 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_1 53734 54888 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_1 50913 51521 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_1 49575 50485 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_1 48937 49422 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 54755 56194 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_1 51527 52558 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_1 52551 53519 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_1 54866 55561 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_1 53734 54888 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_1 50913 51521 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_1 49575 50485 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_1 48937 49422 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_4 15679 16416 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 2238960 2240456 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_2 1487355 1488188 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_4 32516 33163 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_2 2408162 2410081 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 1119389 1119883 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_2 1352059 1352553 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
79578
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 16879 17673 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_2 14542 15039 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_2 17677 18439 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 476869 478365 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 16879 17673 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1360540 1361034 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_2 14542 15039 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_1 344087 345814 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 346373 347426 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1815872 1817026 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_2 17679 18414 ErmB 0/0 99 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 476869 478365 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 16879 17673 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 17677 18414 (MLS)erm(B) 0/0 100 99 M11180:714-1451 (MLS)erm(B) NA
contig_1 476869 478365 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1360540 1361034 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
contig_2 14542 15039 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
79579
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 155343 156782 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_3 10276 11184 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_3 8850 9644 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 14443 15205 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 2194826 2196322 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 2361033 2362952 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 2685825 2687744 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_2 6066 8672 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 155343 156782 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_3 10276 11106 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_3 8850 9644 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1084405 1084899 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 1354417 1354911 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 2148309 2148803 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 2378665 2380392 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2377053 2378106 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 599308 600462 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 14435 15180 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 2194826 2196322 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 9737 10279 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 2361033 2362952 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 2685825 2687744 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_2 6680 7711 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_2 7704 8672 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_2 10019 10714 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_2 8887 10041 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_2 6066 6674 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_2 4728 5638 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_2 4090 4575 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 155343 156782 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_3 10276 11184 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_3 8850 9644 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_3 9737 10279 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_2 6680 7711 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_2 7704 8672 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_2 10019 10714 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_2 8887 10041 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_2 6066 6674 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_2 4728 5638 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_2 4090 4575 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_3 14443 15180 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 2194826 2196322 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1493360 1494193 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 2361033 2362952 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2685825 2687744 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1084405 1084899 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 1354417 1354911 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_1 2148309 2148803 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
79707
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 331183 332679 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2322947 2323441 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 1308578 1310305 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1310864 1311917 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1833848 1835002 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 331183 332679 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 331183 332679 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 2643171 2644004 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 2322947 2323441 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
79867
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1358353 1359849 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2249219 2249713 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 1222791 1224518 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1225077 1226130 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2670930 2672084 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 1358353 1359849 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1358353 1359849 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1888711 1889544 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 2249219 2249713 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
80213
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 3078040 3079479 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_5 4922 5830 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_5 6462 7256 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_6 15292 15939 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_5 901 1663 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_6 895 1648 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1062324 1063820 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 579991 581910 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 894906 896825 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 3078040 3079479 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_5 5000 5830 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_5 6462 7256 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 2150960 2151454 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 1149386 1149880 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 1919506 1920000 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 877466 879193 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 879752 880805 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2634348 2635502 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_6 15292 15939 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_5 926 1671 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_6 911 1656 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 1062324 1063820 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_5 5827 6369 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 579991 581910 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 894906 896825 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 3078040 3079479 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_5 4922 5830 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_5 6462 7256 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_5 5827 6369 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_5 926 1663 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_6 911 1648 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1062324 1063820 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1781533 1782366 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_6 15292 15939 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 579991 581910 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 894906 896825 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2150960 2151454 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 1149386 1149880 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_1 1919506 1920000 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
80275
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 10744 11652 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_2 12284 13078 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_2 13799 14561 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 1903703 1905199 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_2 27146 28522 tet(L)_2 0/0 100 100 M29725 tet(L) Doxycycline, Tetracycline
contig_2 28716 30635 tet(M)_10 0/0 100 96 EU182585 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 10822 11652 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_2 12284 13078 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_3 1109008 1109502 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_3 2073382 2075109 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_3 2071770 2072823 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_3 1556531 1557685 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_2 13824 14569 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 1903703 1905199 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 11649 12191 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_2 27146 28522 tet(L) 0/0 100 100 M11036:0-1377 TetL is a tetracycline efflux protein found in many species of Gram-negative and Gram-positive bacteria. tetracycline
contig_2 28716 30635 tetM 0/0 100 95 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 10744 11652 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_2 12284 13078 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 11649 12191 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_2 13824 14561 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 1903703 1905199 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_3 785046 785879 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_2 27146 28522 (Tet)tetL 0/0 100 100 FN435329:1-1377 (Tet)tetL NA
contig_2 28716 30635 (Tet)tetM 0/0 100 96 DQ534550:1451-3370 (Tet)tetM NA
contig_3 1109008 1109502 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
80343
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 33053 33700 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_4 16019 16781 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 2381159 2382655 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 2211535 2213454 tet(M)_1 0/0 100 100 X92947 tet(M) Doxycycline, Tetracycline, Minocycline
contig_2 74636 77242 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 226342 226836 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 3151254 3151748 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 2194237 2195964 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2196523 2197576 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 706514 707668 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_4 33053 33700 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_4 16011 16756 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 2381159 2382655 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 2211535 2213454 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_2 75597 76628 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_2 74636 75604 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_2 72594 73289 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_2 73267 74421 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_2 76634 77242 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_2 77670 78580 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_2 78733 79218 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 75597 76628 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_2 74636 75604 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_2 72594 73289 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_2 73267 74421 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_2 76634 77242 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_2 77670 78580 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_2 78733 79218 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_4 16019 16756 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 2381159 2382655 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 3015620 3016453 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_4 33053 33700 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 2211535 2213454 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 226342 226836 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 3151254 3151748 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
80344
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1708088 1709527 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_4 22269 23177 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_4 20843 21637 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 12446 13056 cat(pC221)_1 0/0 94 98 X02529 cat(pC221) Chloramphenicol
contig_4 26436 27198 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 511643 513139 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 679993 681912 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 1013596 1015515 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_4 3265 5871 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
contig_5 29616 32222 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1708088 1709527 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_4 22269 23099 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_4 20843 21637 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 2716256 2716750 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 465126 465620 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 2947709 2948203 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 697625 699352 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 696013 697066 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2190828 2191982 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 12446 13056 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 94 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_4 26428 27173 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 511643 513139 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_4 21730 22272 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 679993 681912 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 1013596 1015515 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_4 4226 5257 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_5 30577 31608 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_4 3265 4233 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_5 29616 30584 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_4 1223 1918 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_5 27574 28269 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_4 1896 3050 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_5 28247 29401 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_4 5263 5871 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_5 31614 32222 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_4 6299 7209 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_5 32650 33560 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_4 7362 7847 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
contig_5 33713 34198 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1708088 1709527 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_4 22269 23177 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_4 20843 21637 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_4 21730 22272 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_4 4226 5257 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_5 30577 31608 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_4 3265 4233 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_5 29616 30584 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_4 1223 1918 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_5 27574 28269 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_4 1896 3050 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_5 28247 29401 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_4 5263 5871 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_5 31614 32222 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_4 6299 7209 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_5 32650 33560 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_4 7362 7847 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_5 33713 34198 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_4 26436 27173 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 511643 513139 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 3085391 3086224 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 12446 13056 (Phe)cat-pC221 0/0 94 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 679993 681912 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1013596 1015515 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2716256 2716750 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 465126 465620 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_1 2947709 2948203 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
80411
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 587988 589484 lsa(A)_3 0/0 100 100 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_3 1530216 1532135 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 2660431 2660925 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_3 757353 759080 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_3 755741 756794 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_3 2177695 2178849 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 587988 589484 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 1530216 1532135 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 587988 589484 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_3 70938 71771 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 1530216 1532135 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_3 2660431 2660925 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
80564
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 3078132 3079571 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_3 4922 5830 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_3 6462 7256 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_1 5899 6546 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_1 9922 10675 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 901 1663 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 1062400 1063896 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_2 579992 581911 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_2 894982 896901 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 3078132 3079571 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_3 5000 5830 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_3 6462 7256 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_2 2151053 2151547 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_2 1149462 1149956 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_2 1919599 1920093 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_2 877542 879269 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 879828 880881 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 2634439 2635593 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 5899 6546 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_1 9938 10683 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 926 1671 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 1062400 1063896 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 5827 6369 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_2 579992 581911 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_2 894982 896901 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 3078132 3079571 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_3 4922 5830 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_3 6462 7256 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_3 5827 6369 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_1 9938 10675 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 926 1663 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 1062400 1063896 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_2 1781603 1782436 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 5899 6546 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_2 579992 581911 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 894982 896901 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 2151053 2151547 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_2 1149462 1149956 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_2 1919599 1920093 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
80725
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_5 129429 130739 aac(6’)-aph(2’’)_1 0/0 91 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_7 1270164 1270712 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_13 14691 15603 ant(6)-Ia_1 1/4 100 100 AF330699 ant(6)-Ia Streptomycin
contig_13 16235 17029 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_7 705426 705923 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_13 10670 11432 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_7 884777 886255 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_13 26007 28613 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_5 129429 130739 AAC(6’)-Ie-APH(2’’)-Ia 0/0 91 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_7 1270164 1270712 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_13 14773 15603 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_13 16235 17029 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_7 705426 705923 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_7 217204 218490 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_13 10695 11440 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_7 884777 886255 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_13 15600 16142 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_13 26968 27999 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_13 26007 26975 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_13 22458 23153 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_13 23131 24285 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_13 28005 28613 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_13 29858 30769 vanYA 0/0 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_13 30922 31407 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_5 129429 130739 (AGly)aac6-Aph2 0/0 91 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_7 1270164 1270712 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_13 14691 15603 (AGly)ant6-Ia 1/4 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_13 16235 17029 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_13 15600 16142 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_13 26968 27999 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_13 26007 26975 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_13 22458 23153 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_13 23131 24285 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_13 28005 28613 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_13 29858 30769 (Gly)vanY-A 0/0 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_13 30922 31407 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_13 10695 11432 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_7 884777 886255 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_7 705426 705923 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
80740
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2542396 2543892 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1677612 1678106 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 30063 31790 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 28450 29504 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1243800 1244954 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 2542396 2543892 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2542396 2543892 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 2046673 2047506 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1677612 1678106 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
80797
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2066488 2067984 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1188137 1188631 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2201420 2203147 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2199808 2200861 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 737119 738273 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 2066488 2067984 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2066488 2067984 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1516923 1517756 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1188137 1188631 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
80798
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 1723 3162 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_12 37805 38713 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_12 36379 37173 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 35434 36044 cat(pC221)_1 0/0 94 98 X02529 cat(pC221) Chloramphenicol
contig_12 41972 42734 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 2419633 2421129 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_4 260582 262501 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_4 2587983 2589902 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 26430 29036 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
contig_12 18801 21407 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 1723 3162 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_12 37805 38635 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_12 36379 37173 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_4 1343493 1343987 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_4 1574945 1575439 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_4 2373116 2373610 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_4 243142 244869 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_4 245428 246481 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_4 818065 819219 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 35434 36044 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 94 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_12 41964 42709 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 2419633 2421129 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_12 37266 37808 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_4 260582 262501 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_4 2587983 2589902 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 27391 28422 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_12 19762 20793 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_1 26430 27398 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_12 18801 19769 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_1 24388 25083 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_12 16759 17454 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_1 25061 26215 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_12 17432 18586 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_1 28428 29036 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_12 20799 21407 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_1 29464 30374 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_12 21835 22745 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_1 30527 31012 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
contig_12 22898 23383 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 1723 3162 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_12 37805 38713 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_12 36379 37173 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_12 37266 37808 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_1 27391 28422 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_12 19762 20793 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_1 26430 27398 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_12 18801 19769 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_1 24388 25083 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_12 16759 17454 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_1 25061 26215 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_12 17432 18586 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_1 28428 29036 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_12 20799 21407 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_1 29464 30374 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_12 21835 22745 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_1 30527 31012 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_12 22898 23383 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_12 41972 42709 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 2419633 2421129 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_4 1711293 1712126 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 35434 36044 (Phe)cat-pC221 0/0 94 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_4 260582 262501 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_4 2587983 2589902 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_4 1343493 1343987 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_4 1574945 1575439 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_4 2373116 2373610 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
80829
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2066485 2067981 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1188136 1188630 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2201417 2203144 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2199805 2200858 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 737119 738273 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 2066485 2067981 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2066485 2067981 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1516921 1517754 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1188136 1188630 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
80889
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 344737 345285 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_1 730929 732407 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 344737 345285 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_1 1360810 1362096 efmA 0/0 100 99 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_1 730929 732407 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 344737 345285 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_1 730929 732407 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
81048
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_15 1158 2597 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_15 4196 4990 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_77 4971 6467 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_15 1158 2597 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_15 2765 3564 aad(6) 0/0 96 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_15 4196 4990 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_92 17815 18309 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_37 29930 31656 efrA 1/1 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_37 28318 29371 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_74 14553 15707 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_77 4971 6467 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_15 3561 4103 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_15 1158 2597 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_15 4196 4990 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_15 3561 4103 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_77 4971 6467 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_64 22494 23327 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_92 17815 18309 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
81314
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1724 3163 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_6 32829 33476 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_6 15992 16754 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 796858 798354 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 627233 629152 tet(M)_1 0/0 100 100 X92947 tet(M) Doxycycline, Tetracycline, Minocycline
contig_3 6232 8838 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
contig_4 47759 50365 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1724 3163 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_1 1797461 1797955 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 1564790 1565284 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 609935 611662 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 612221 613274 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2277634 2278788 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_6 32829 33476 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_6 15984 16729 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 796858 798354 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 627233 629152 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_3 7193 8224 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_4 48373 49404 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_3 6232 7200 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_4 49397 50365 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_3 4190 4885 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_4 51712 52407 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_3 4863 6017 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_4 50580 51734 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_3 8230 8838 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_4 47759 48367 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_3 9266 10176 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_4 46421 47331 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_3 10329 10814 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
contig_4 45783 46268 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1724 3163 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_3 7193 8224 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_4 48373 49404 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_3 6232 7200 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_4 49397 50365 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_3 4190 4885 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_4 51712 52407 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_3 4863 6017 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_4 50580 51734 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_3 8230 8838 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_4 47759 48367 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_3 9266 10176 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_4 46421 47331 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_3 10329 10814 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_4 45783 46268 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_6 15992 16729 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 796858 798354 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1429156 1429989 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_6 32829 33476 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 627233 629152 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1797461 1797955 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 1564790 1565284 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
81378
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1267310 1267858 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_2 1410 2318 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_2 2950 3744 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_1 867594 868091 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_2 37283 38045 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1655726 1657204 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 8581 10521 tet(S)_3 0/0 100 100 X92946 tet(S) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1267310 1267858 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_2 1488 2318 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_2 2950 3744 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 867594 868091 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_1 2345659 2346945 efmA 0/0 100 99 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_2 37308 38053 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 1655726 1657204 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 2315 2857 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_2 8596 10521 tetS 0/0 100 100 L09756:0-1926 Tet(S) is a ribosomal protection protein found in Gram-positive and Gram-negative strains. It is similar to tet(M) and tet(O). tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1267310 1267858 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_2 1410 2318 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_2 2950 3744 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 2315 2857 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_2 37308 38045 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1655726 1657204 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_2 8596 10521 (Tet)tetS 0/0 100 100 L09756:447-2372 (Tet)tetS NA
contig_1 867594 868091 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
81440
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 512665 514161 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1403667 1404161 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 340420 342147 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 342706 343759 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1825380 1826534 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 512665 514161 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 512665 514161 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1043162 1043995 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1403667 1404161 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
81456
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1095479 1096918 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_1 1093086 1093880 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_1 1087033 1087795 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1097745 1098507 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1936671 1938167 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 436780 438699 tet(M)_10 0/0 100 100 EU182585 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1095479 1096918 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_1 1094512 1095311 aad(6) 0/0 96 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_1 1093086 1093880 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1002687 1003181 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 2069214 2070941 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2067602 2068655 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 560875 562029 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 1087025 1087770 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 1097737 1098482 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 1936671 1938167 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 1093973 1094515 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 436780 438699 tetM 0/0 100 94 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1095479 1096918 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_1 1093086 1093880 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_1 1093973 1094515 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_1 1087033 1087770 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1097745 1098482 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1936671 1938167 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1362052 1362885 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 436780 438699 (Tet)tetM 0/0 100 94 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1002687 1003181 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
81863
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 81257 82696 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_4 39463 40371 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_4 41003 41797 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_4 31426 32073 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_4 14652 15405 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 35442 36204 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 156186 157682 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 323181 325100 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 640760 642679 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 81257 82696 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_4 39541 40371 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_4 41003 41797 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_2 1009216 1009710 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 109646 110140 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_2 1240670 1241164 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 340813 342540 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 339201 340254 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 525172 526326 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_4 31426 32073 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_4 14644 15389 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 35467 36212 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 156186 157682 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_4 40368 40910 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 323181 325100 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 640760 642679 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 81257 82696 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_4 39463 40371 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_4 41003 41797 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_4 40368 40910 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_4 14652 15389 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 35467 36204 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 156186 157682 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_2 1376972 1377805 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_4 31426 32073 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 323181 325100 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 640760 642679 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 1009216 1009710 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 109646 110140 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_2 1240670 1241164 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
81956
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1954465 1955904 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_1 1940416 1941279 ant(6)-Ia_2 0/0 100 100 KF421157 ant(6)-Ia Streptomycin
contig_1 1952072 1952866 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_1 536666 537163 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_1 1935352 1936114 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1945163 1945966 lnu(B)_2 0/0 100 100 JQ861959 lnu(B) Lincomycin, Clindamycin
contig_1 2738143 2739639 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 1946020 1947504 lsa(E)_1 0/0 100 100 JX560992 lsa(E) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M, Tiamulin
contig_1 1284610 1286529 tet(M)_10 0/0 100 100 EU182585 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1954465 1955904 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_1 1953498 1954297 aad(6) 0/0 96 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_1 1940416 1941279 ANT(6)-Ia 0/0 100 100 KF648874.1:61860-60996 ANT(6)-Ia is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and chromosomes in Staphylococcus epidermidis E. faecium Streptococcus suis S. aureus E. faecalis and Streptococcus mitis aminoglycoside
contig_1 1952072 1952866 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1852218 1852712 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 536666 537163 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_1 2868968 2870695 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2867356 2868409 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 1408706 1409860 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 1935344 1936089 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 2738143 2739639 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 1945163 1945966 lsaE 0/0 100 100 AF408195.1:9446-10250 lsaE is an ABC-F subfamily protein found in porcine MRSA isolates. It confers resistance to pleuromutilin lincosamide and streptogramin A lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 1952959 1953501 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 1284610 1286529 tetM 0/0 100 94 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1954465 1955904 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_1 1952072 1952866 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_1 1952959 1953501 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_1 1949571 1950380 (AGly)spw 0/0 100 100 NG_048075:101-910 (AGly)spw NA
contig_1 1935352 1936089 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1945163 1945966 (MLS)lnu((B) 0/0 100 100 KC688833:1-804 (MLS)lnu((B) NA
contig_1 2738143 2739639 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 2160761 2161594 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 1284610 1286529 (Tet)tetM 0/0 100 94 DQ534550:1451-3370 (Tet)tetM NA
contig_1 1852218 1852712 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 536666 537163 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
81958
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_15 59928 61238 aac(6’)-aph(2’’)_1 0/0 91 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_7 1437843 1438391 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_41 10195 11107 ant(6)-Ia_1 1/4 100 100 AF330699 ant(6)-Ia Streptomycin
contig_30 484 1278 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_41 8769 9563 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_7 724714 725211 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_41 14366 15128 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 468309 469805 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_7 992109 993587 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_41 26641 29247 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_15 59928 61238 AAC(6’)-Ie-APH(2’’)-Ia 0/0 91 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_7 1437843 1438391 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_41 10195 11025 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_30 484 1278 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_41 8769 9563 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_7 724714 725211 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_7 241099 242385 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_4 337254 338981 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_4 339540 340593 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_41 14358 15103 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 468309 469805 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_7 992109 993587 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_30 1371 1914 SAT-4 1/1 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_41 9656 10198 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_41 27255 28286 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_41 28279 29247 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_41 2649 3344 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_41 1517 2671 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_41 26641 27249 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_15 59928 61238 (AGly)aac6-Aph2 0/0 91 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_7 1437843 1438391 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_41 10195 11107 (AGly)ant6-Ia 1/4 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_30 484 1278 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_41 8769 9563 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_30 1371 1914 (AGly)sat4A 1/1 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_41 9656 10198 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_41 27255 28286 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_41 28279 29247 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_41 2649 3344 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_41 1517 2671 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_41 26641 27249 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_41 14366 15103 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 468309 469805 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_7 992109 993587 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_7 724714 725211 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
81973
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1489131 1490570 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_5 35968 37407 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_7 42613 43521 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_7 44153 44947 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_6 2590 3352 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 2586436 2587932 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_2 2025391 2027310 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1489131 1490570 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_5 35968 37407 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_7 42691 43521 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_7 44153 44947 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_2 486134 486628 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_2 2416705 2418432 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 2418991 2420044 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 1007557 1008711 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_6 2582 3327 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 2586436 2587932 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_7 43518 44060 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_2 2025391 2027310 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1489131 1490570 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_5 35968 37407 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_7 42613 43521 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_7 44153 44947 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_7 43518 44060 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_6 2590 3327 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 2586436 2587932 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_2 169451 170284 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_2 2025391 2027310 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 486134 486628 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
82126
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_10 59962 61272 aac(6’)-aph(2’’)_1 0/0 91 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_5 411010 411558 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_16 10844 11756 ant(6)-Ia_1 1/4 100 100 AF330699 ant(6)-Ia Streptomycin
contig_16 12388 13182 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_5 2590616 2591113 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_16 6823 7585 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_5 2855457 2856935 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_16 23223 25829 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_10 59962 61272 AAC(6’)-Ie-APH(2’’)-Ia 0/0 91 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_5 411010 411558 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_16 10926 11756 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_16 12388 13182 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_5 2590616 2591113 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_5 2103124 2104410 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_16 6848 7593 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_5 2855457 2856935 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_16 11753 12295 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_16 24184 25215 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_16 23223 24191 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_16 18609 19304 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_16 19282 20436 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_16 25221 25829 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_16 26999 27910 vanYA 0/0 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_16 28063 28548 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_10 59962 61272 (AGly)aac6-Aph2 0/0 91 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_5 411010 411558 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_16 10844 11756 (AGly)ant6-Ia 1/4 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_16 12388 13182 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_16 11753 12295 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_16 24184 25215 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_16 23223 24191 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_16 18609 19304 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_16 19282 20436 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_16 25221 25829 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_16 26999 27910 (Gly)vanY-A 0/0 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_16 28063 28548 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_16 6848 7585 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_5 2855457 2856935 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_5 2590616 2591113 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
82128
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 33052 33699 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_3 16018 16780 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 2328631 2330127 lsa(A)_1 0/0 100 98 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_2 2497832 2499751 tet(M)_1 0/0 100 100 X92947 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 11242 13848 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 1326822 1327316 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_2 1559493 1559987 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_2 2515322 2517049 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 2513710 2514763 efrB 6/6 97 97 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 845990 847144 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 33052 33699 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_3 16010 16755 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 2328631 2330127 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 2497832 2499751 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 12203 13234 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_1 11242 12210 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_1 9200 9895 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_1 9873 11027 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_1 13240 13848 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_1 14276 15186 vanYA 1/1 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_1 15339 15824 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 12203 13234 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_1 11242 12210 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_1 9200 9895 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_1 9873 11027 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_1 13240 13848 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_1 14276 15186 (Gly)vanY-A 1/1 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_1 15339 15824 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_3 16018 16755 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 2328631 2330127 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_2 1694814 1695647 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 33052 33699 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_2 2497832 2499751 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 1326822 1327316 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_2 1559493 1559987 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
82591
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1180906 1181640 erm(G)_1 0/0 100 97 M15332 erm(G) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1181889 1183332 msr(D)_3 0/0 99 94 AF227520 msr(D) Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1192877 1194796 tet(M)_1 0/0 100 100 X92947 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 1624911 1626511 VanC1XY_1 0/0 100 100 AF162694 VanC1XY Vancomycin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1180906 1181640 ErmG 0/0 100 96 L42817:201-936 ErmG is a rRNA adenine N-6-methyltransferase that protects the ribosome from inactivation due to antibiotic binding. lincosamide, macrolide, streptogramin
contig_1 1192877 1194796 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 1624911 1625942 vanC 0/0 100 100 AF162694:1410-2442 VanC is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Ser an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It is specific to Enterococcus gallinarum and E. casseliflavus providing intrinsic resistance. glycopeptide
contig_1 1628693 1629388 vanRC 0/0 100 100 AF162694:5192-5888 vanRC is a vanR variant found in the vanC gene cluster glycopeptide
contig_1 1629378 1630461 vanSC 0/0 100 100 AF162694:5877-6963 vanSC is a vanS variant found in the vanC gene cluster glycopeptide
contig_1 1626508 1628604 vanTC 0/0 100 100 AF162694:3007-5104 vanTC is a vanT variant found in the vanC gene cluster glycopeptide
contig_1 1625939 1626511 vanXYC 0/0 100 100 AF162694:2438-3011 vanXYC is a vanXY variant found in the vanC gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1624911 1625942 (Gly)vanC 0/0 100 100 AF162694:1411-2442 (Gly)vanC NA
contig_1 1628693 1629388 (Gly)vanR-C 0/0 100 100 AF162694:5193-5888 (Gly)vanR-C NA
contig_1 1629378 1630461 (Gly)vanS-C 0/0 100 99 DQ022190:4672-5757 (Gly)vanS-C NA
contig_1 1626508 1628604 (Gly)vanT 0/0 100 100 AF162694:3008-5104 (Gly)vanT NA
contig_1 1625939 1626511 (Gly)vanX-Yc 0/0 100 100 DQ022190:1233-1805 (Gly)vanX-Yc NA
contig_1 1180906 1181640 (MLS)erm(G) 0/0 100 97 M15332:672-1406 (MLS)erm(G) NA
contig_1 1181889 1183332 (MLS)msr(D) 0/0 99 94 AF274302:2462-3925 (MLS)msr(D) NA
contig_1 1192877 1194796 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
82961
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 85146 86456 aac(6’)-aph(2’’)_1 0/0 91 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_4 1374529 1375077 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_14 31255 32167 ant(6)-Ia_1 1/4 100 100 AF330699 ant(6)-Ia Streptomycin
contig_14 32799 33593 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_4 2048788 2049285 dfrG_1 0/0 100 100 AB205645 dfrG Trimethoprim
contig_14 25712 26474 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 1813796 1815274 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_14 1706 4312 VanHAX_2 0/0 100 100 M97297 VanHAX Vancomycin, Teicoplanin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 85146 86456 AAC(6’)-Ie-APH(2’’)-Ia 0/0 91 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_4 1374529 1375077 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_14 31337 32167 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_14 32799 33593 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_4 2048788 2049285 dfrG 0/0 100 100 AB205645:1012-1510 dfrG is a plasmid-encoded dihydrofolate reductase found in Staphylococcus aureus diaminopyrimidine
contig_4 2538055 2539341 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_14 25737 26482 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 1813796 1815274 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_14 32164 32706 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_14 2667 3698 vanA 0/0 100 100 M97297:6979-8010 VanA is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Lac an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It has been isolated from VREs. It is associated with both vancomycin and teicoplanin resistance. glycopeptide
contig_14 1706 2674 vanHA 0/0 100 100 M97297:6018-6986 vanHA also known as vanH is a vanH variant in the vanA gene cluster glycopeptide
contig_14 39018 39713 vanRA 0/0 100 100 M97297:3976-4671 vanRA also known as vanR is a vanR variant found in the vanA gene cluster glycopeptide
contig_14 39691 40845 vanSA 0/0 100 100 M97297:4649-5803 vanSA also known as vanS is a vanS variant found in the vanA gene cluster glycopeptide
contig_14 3704 4312 vanXA 0/0 100 100 M97297:8016-8624 vanXA also known as vanX is a vanX variant found in the vanA gene cluster glycopeptide
contig_14 5482 6393 vanYA 0/0 100 100 M97297:9052-9963 vanYA also known as vanY is a vanY variant found in the vanA gene cluster glycopeptide
contig_14 6546 7031 vanZA 0/0 100 100 M97297:10116-10601 vanZA also known as vanZ is a vanZ variant found in the vanA gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 85146 86456 (AGly)aac6-Aph2 0/0 91 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_4 1374529 1375077 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_14 31255 32167 (AGly)ant6-Ia 1/4 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_14 32799 33593 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_14 32164 32706 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_14 2667 3698 (Gly)vanA-A 0/0 100 100 M97297:6979-8010 (Gly)vanA-A NA
contig_14 1706 2674 (Gly)vanH-A 0/0 100 100 FJ866609:3762-4730 (Gly)vanH-A NA
contig_14 39018 39713 (Gly)vanR-A 0/0 100 100 M97297:3976-4671 (Gly)vanR-A NA
contig_14 39691 40845 (Gly)vanS-A 0/0 100 100 M97297:4649-5803 (Gly)vanS-A NA
contig_14 3704 4312 (Gly)vanX-A 0/0 100 100 M97297:8016-8624 (Gly)vanX-A NA
contig_14 5482 6393 (Gly)vanY-A 0/0 100 100 M97297:9052-9963 (Gly)vanY-A NA
contig_14 6546 7031 (Gly)vanZ-A 0/0 100 100 M97297:10116-10601 (Gly)vanZ-A NA
contig_14 25737 26474 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 1813796 1815274 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
contig_4 2048788 2049285 (Tmt)dfrG 0/0 100 100 AB205645:1013-1510 (Tmt)dfrG NA
84170
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1404 2843 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_2 4415 5323 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_2 2989 3783 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 11876 12523 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_2 8582 9344 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 7745 8507 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1148772 1150268 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 125584 127503 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 438982 440901 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1404 2843 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_2 4415 5245 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_2 2989 3783 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 2215157 2215651 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 1982372 1982866 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 143216 144943 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 141604 142657 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2701208 2702362 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_3 11876 12523 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_2 8574 9319 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 7737 8482 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 1148772 1150268 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 3876 4418 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 125584 127503 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 438982 440901 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1404 2843 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_2 4415 5323 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_2 2989 3783 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 3876 4418 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_2 8582 9319 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 7745 8482 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1148772 1150268 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1848890 1849723 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_3 11876 12523 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 125584 127503 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 438982 440901 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2215157 2215651 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 1982372 1982866 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
85134
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1404 2843 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_3 63217 64125 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_3 61791 62585 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_6 4203 4850 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_3 73 835 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_6 72 834 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 1147374 1148870 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 125584 127503 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_1 439156 441075 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1404 2843 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_3 63217 64047 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_3 61791 62585 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 2228211 2228705 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 1995427 1995921 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_1 143216 144943 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 141604 142657 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2714260 2715414 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_6 4203 4850 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_3 65 810 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_6 64 809 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 1147374 1148870 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 62678 63220 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 125584 127503 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_1 439156 441075 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 1404 2843 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_3 63217 64125 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_3 61791 62585 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_3 62678 63220 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_3 73 810 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_6 72 809 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 1147374 1148870 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 1860614 1861447 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_6 4203 4850 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 125584 127503 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 439156 441075 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2228211 2228705 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_1 1995427 1995921 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
85160
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 991879 993318 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_4 24467 25375 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_4 26007 26801 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_5 10181 10828 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_4 20446 21208 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_5 14197 14959 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_2 3002411 3003907 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_2 553630 555549 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_2 867219 869138 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 991879 993318 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_4 24545 25375 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_4 26007 26801 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_2 1922577 1923071 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_2 2155361 2155855 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_2 849779 851506 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 852065 853118 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_2 1435847 1437001 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_5 10181 10828 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_4 20471 21216 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_5 14222 14967 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_2 3002411 3003907 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_4 25372 25914 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_2 553630 555549 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_2 867219 869138 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 991879 993318 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_4 24467 25375 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_4 26007 26801 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_4 25372 25914 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_4 20471 21208 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_5 14222 14959 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_2 3002411 3003907 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_2 2289836 2290669 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_5 10181 10828 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_2 553630 555549 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 867219 869138 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_2 1922577 1923071 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_2 2155361 2155855 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
85712
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 8210 9118 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_2 9750 10544 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_2 13691 14453 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 649597 651093 lsa(A)_1 0/0 100 99 AY225127 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_1 828516 830435 tet(M)_2 0/0 100 98 X90939 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 8288 9118 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_2 9750 10544 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 2617943 2618437 dfrE 0/0 100 98 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_1 784811 786538 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 783199 784252 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_1 2167152 2168306 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_2 13716 14461 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 649597 651093 lsaA 0/0 100 99 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_2 9115 9657 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_1 828516 830435 tetM 0/0 100 98 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 8210 9118 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_2 9750 10544 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_2 9115 9657 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_2 13716 14453 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 649597 651093 (MLS)lsa(A) 0/0 100 99 AY225127:41-1537 (MLS)lsa(A) NA
contig_1 86378 87211 (MLS)mph(D) 0/0 100 100 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 828516 830435 (Tet)tetM 0/0 100 98 DQ534550:1451-3370 (Tet)tetM NA
contig_1 2617943 2618437 (Tmt)dfrE 0/0 100 98 NG_055770:101-595 (Tmt)dfrE NA
86253
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 514472 515020 aac(6’)-Ii_1 0/0 100 100 L12710 aac(6’)-Ii Amikacin, Tobramycin
contig_3 61879 62787 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_3 51563 52468 aph(2’’)-Id_1 0/0 100 100 AF016483 aph(2’’)-Id Amikacin, Gentamicin, Tobramycin
contig_3 63419 64213 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_3 64938 65700 erm(B)_18 1/1 100 100 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 57568 58371 lnu(B)_2 0/0 100 100 JQ861959 lnu(B) Lincomycin, Clindamycin
contig_3 56030 57514 lsa(E)_1 0/0 100 100 JX560992 lsa(E) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M, Tiamulin
contig_1 944743 946221 msr(C)_1 0/0 100 99 AY004350 msr(C) Erythromycin, Telithromycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 514472 515020 AAC(6’)-Ii 0/0 100 100 L12710:0-549 AAC(6’)-Ii is a chromosomal-encoded aminoglycoside acetyltransferase in Enterococcus spp. aminoglycoside
contig_3 61957 62787 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_3 51563 52468 APH(2’’)-IVa 0/0 100 100 AF016483:0-906 APH(2’’)-IVa is a chromosomal-encoded aminoglycoside phosphotransferase in E. casseliflavus aminoglycoside
contig_3 63419 64213 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_1 1592785 1594071 efmA 0/0 100 100 AB467372.1:284-1571 efmA is an MFS transporter permease in E. faecium. fluoroquinolone, macrolide
contig_3 64963 65708 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 57568 58371 lsaE 0/0 100 100 AF408195.1:9446-10250 lsaE is an ABC-F subfamily protein found in porcine MRSA isolates. It confers resistance to pleuromutilin lincosamide and streptogramin A lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_1 944743 946221 msrC 0/0 100 94 AF313494:0-1479 msrC is a chromosomal-encoded ABC-F subfamily protein expressed in Enterococcus faecium that confers resistance to erythromycin and other macrolide and streptogramin B antibiotics. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_3 62784 63326 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 514472 515020 (AGly)aac6-Ii 0/0 100 100 L12710:169-717 (AGly)aac6-Ii NA
contig_3 61879 62787 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_3 51563 52468 (AGly)aph(2’’)-Id 0/0 100 100 AF016483:131-1036 (AGly)aph(2’’)-Id NA
contig_3 63419 64213 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_3 62784 63326 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_3 64963 65700 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 57568 58371 (MLS)lnu((B) 0/0 100 100 KC688833:1-804 (MLS)lnu((B) NA
contig_1 944743 946221 (MLS)msr(C) 0/0 100 99 AY004350:496-1974 (MLS)msr(C) NA
86535
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 113705 115144 aac(6’)-aph(2’’)_1 0/0 100 100 M13771 aac(6’)-aph(2’’) Amikacin, Gentamicin, Tobramycin
contig_4 20182 21090 ant(6)-Ia_1 0/0 100 100 AF330699 ant(6)-Ia Streptomycin
contig_4 21722 22516 aph(3’)-III_1 0/0 100 100 M26832 aph(3’)-III Amikacin
contig_1 4202 4849 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_1 22622 23269 cat(pC221)_1 0/0 100 98 X02529 cat(pC221) Chloramphenicol
contig_1 73 826 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_1 18493 19246 erm(B)_18 0/0 99 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_4 16161 16923 erm(B)_18 1/1 100 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_3 2211354 2212850 lsa(A)_3 0/0 100 99 AY737526 lsa(A) Lincomycin, Clindamycin, Dalfopristin, Pristinamycin_IIA, Virginiamycin_M
contig_3 2379680 2381599 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
contig_3 2689923 2691842 tet(M)_13 0/0 100 100 AM990992 tet(M) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 113705 115144 AAC(6’)-Ie-APH(2’’)-Ia 0/0 100 100 GU565967.1:26419-24979 AAC(6’)-Ie-APH(2’’)-Ia is an aminoglycoside acetyltransferase encoded by plasmids and transposons in S. aureus E. faecalis E. faecium and Staphylococcus warneri aminoglycoside
contig_4 20260 21090 aad(6) 0/0 100 100 AY712687:0-831 aad(6) is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in E. faecalis and Streptococcus oralis aminoglycoside
contig_4 21722 22516 APH(3’)-IIIa 0/0 100 100 CP004067:52914-53709 APH(3’)-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. aminoglycoside
contig_3 1083718 1084212 dfrE 0/0 100 97 AIIS01000002.1:234307-233812 dfrE is a chromosome-encoded dihydrofolate reductase found in Enterococcus faecalis diaminopyrimidine
contig_3 1316510 1317004 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_3 2125317 2125811 dfrF 0/0 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_3 2397314 2399041 efrA 0/0 100 99 NZ_PTWF01000025.1:35858-37586 efrA is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer drug resistance. fluoroquinolone, macrolide, rifamycin
contig_3 2395702 2396755 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_5 82 1135 efrB 6/6 97 98 HG970103.1:0-1086 efrB is a part of the EfrAB efflux pump and both efrA and efrB are necessary to confer multidrug resistance. fluoroquinolone, macrolide, rifamycin
contig_3 598340 599494 emeA 1/27 98 97 AB091338:173-1355 A multidrug efflux pump from Enterococcus faecalis. There exist efflux activity of several antimicrobial agents such as DAPI Hoechst 33342 and acriflavine. Efflux of DAPI via EmeA was strongly inhibited by reserpine. acridine_dye
contig_1 4202 4849 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_1 22622 23269 Enterococcus_faecalis_chloramphenicol_acetyltransferase 0/0 100 100 X92945.2:9582-8934 A chloramphenicol acetyltransferase and resistance determinant described in Enterococcus faecalis phenicol
contig_1 65 810 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_1 18485 19230 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_4 16186 16931 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_3 2211354 2212850 lsaA 0/0 100 98 AY225127.1:40-1537 LsaA is an ABC-F subfamily protein expressed in Enterococcus faecalis. It confers resistance to clindamycin quinupristin-dalfopristin and dalfopristin. lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline
contig_4 21087 21629 SAT-4 0/0 100 100 U01945:373-916 SAT-4 is a plasmid-mediated streptothricin acetyltransferase and streptothricin (a nucleoside antibiotic) resistant determinant. Originally described from a Campylobacter coli BE/G4 plasmid gene sequence by Jacob et al 1994. nucleoside
contig_3 2379680 2381599 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
contig_3 2689923 2691842 tetM 0/0 100 100 AM990992.1:1003680-1001760 TetM is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 113705 115144 (AGly)aac6-Aph2 0/0 100 100 M13771:304-1743 (AGly)aac6-Aph2 NA
contig_4 20182 21090 (AGly)ant6-Ia 0/0 100 100 AF330699:22-930 (AGly)ant6-Ia NA
contig_4 21722 22516 (AGly)aph(3’’)-III 0/0 100 100 V01547:535-1329 (AGly)aph(3’’)-III NA
contig_4 21087 21629 (AGly)sat4A 0/0 100 100 X92945:38870-39412 (AGly)sat4A NA
contig_1 73 810 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_1 18493 19230 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_4 16186 16923 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_3 2211354 2212850 (MLS)lsa(A) 0/0 100 98 AY225127:41-1537 (MLS)lsa(A) NA
contig_3 1454145 1454978 (MLS)mph(D) 0/0 100 99 NC_017312:2291580-2292413 (MLS)mph(D) NA
contig_1 4202 4849 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_1 22622 23269 (Phe)cat-pC221 0/0 100 98 X02529:2267-2914 (Phe)cat-pC221 NA
contig_3 2379680 2381599 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_3 2689923 2691842 (Tet)tetM 0/0 100 99 DQ534550:1451-3370 (Tet)tetM NA
contig_3 1083718 1084212 (Tmt)dfrE 0/0 100 97 NG_055770:101-595 (Tmt)dfrE NA
contig_3 1316510 1317004 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_3 2125317 2125811 (Tmt)dfrF 0/0 100 100 NG_047755:101-595 (Tmt)dfrF NA
barcode17
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 491148 492748 VanC1XY_1 0/0 100 100 AF162694 VanC1XY Vancomycin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 491148 492179 vanC 0/0 100 100 AF162694:1410-2442 VanC is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Ser an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It is specific to Enterococcus gallinarum and E. casseliflavus providing intrinsic resistance. glycopeptide
contig_4 494930 495625 vanRC 0/0 100 100 AF162694:5192-5888 vanRC is a vanR variant found in the vanC gene cluster glycopeptide
contig_4 495615 496700 vanSC 0/0 100 100 AF162694:5877-6963 vanSC is a vanS variant found in the vanC gene cluster glycopeptide
contig_4 492745 494841 vanTC 0/0 100 100 AF162694:3007-5104 vanTC is a vanT variant found in the vanC gene cluster glycopeptide
contig_4 492176 492748 vanXYC 0/0 100 100 AF162694:2438-3011 vanXYC is a vanXY variant found in the vanC gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_4 491148 492179 (Gly)vanC 0/0 100 100 AF162694:1411-2442 (Gly)vanC NA
contig_4 494930 495625 (Gly)vanR-C 0/0 100 100 AF162694:5193-5888 (Gly)vanR-C NA
contig_4 495615 496700 (Gly)vanS-C 0/0 100 99 DQ022190:4672-5757 (Gly)vanS-C NA
contig_4 492745 494841 (Gly)vanT 0/0 100 100 AF162694:3008-5104 (Gly)vanT NA
contig_4 492176 492748 (Gly)vanX-Yc 0/0 100 100 DQ022190:1233-1805 (Gly)vanX-Yc NA
barcode18
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_8 3080767 3081516 erm(B)_18 0/0 98 99 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig_8 3251686 3253286 VanC1XY_1 0/0 100 100 AF162694 VanC1XY Vancomycin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_8 1144280 1144775 dfrF 1/1 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_8 1800216 1800711 dfrF 1/1 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_8 2199332 2199827 dfrF 1/1 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_8 2430807 2431302 dfrF 1/1 100 100 AF028812:392-887 dfrF is a chromosome-encoded dihydrofolate reductase found in Streptococcus pyogenes diaminopyrimidine
contig_8 3080759 3081504 ErmB 1/1 100 99 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig_8 3251686 3252717 vanC 0/0 100 100 AF162694:1410-2442 VanC is a D-Ala-D-Ala ligase homolog that synthesizes D-Ala-D-Ser an alternative substrate for peptidoglycan synthesis that reduces vancomycin binding affinity. It is specific to Enterococcus gallinarum and E. casseliflavus providing intrinsic resistance. glycopeptide
contig_8 3255468 3256163 vanRC 0/0 100 100 AF162694:5192-5888 vanRC is a vanR variant found in the vanC gene cluster glycopeptide
contig_8 3256153 3257238 vanSC 0/0 100 100 AF162694:5877-6963 vanSC is a vanS variant found in the vanC gene cluster glycopeptide
contig_8 3253283 3255379 vanTC 0/0 100 100 AF162694:3007-5104 vanTC is a vanT variant found in the vanC gene cluster glycopeptide
contig_8 3252714 3253286 vanXYC 0/0 100 100 AF162694:2438-3011 vanXYC is a vanXY variant found in the vanC gene cluster glycopeptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_8 3251686 3252717 (Gly)vanC 0/0 100 100 AF162694:1411-2442 (Gly)vanC NA
contig_8 3255468 3256163 (Gly)vanR-C 0/0 100 100 AF162694:5193-5888 (Gly)vanR-C NA
contig_8 3256153 3257238 (Gly)vanS-C 0/0 100 99 DQ022190:4672-5757 (Gly)vanS-C NA
contig_8 3253283 3255379 (Gly)vanT 0/0 100 100 AF162694:3008-5104 (Gly)vanT NA
contig_8 3252714 3253286 (Gly)vanX-Yc 0/0 100 100 DQ022190:1233-1805 (Gly)vanX-Yc NA
contig_8 3080767 3081504 (MLS)erm(B) 0/0 100 100 M11180:714-1451 (MLS)erm(B) NA
contig_8 1144280 1144775 (Tmt)dfrF 1/1 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_8 1800216 1800711 (Tmt)dfrF 1/1 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_8 2199332 2199827 (Tmt)dfrF 1/1 100 100 NG_047755:101-595 (Tmt)dfrF NA
contig_8 2430807 2431302 (Tmt)dfrF 1/1 100 100 NG_047755:101-595 (Tmt)dfrF NA
barcode19
Resfinder
## [1] "No antimicrobial resitance genes from Resfinder database were found"
CARD
## [1] "No antimicrobial resitance genes from CARD database were found"
ARG-ANNOT
## [1] "No antimicrobial resitance genes from ARG-ANNOT database were found"


Summary figures

Presence/Absence of antimicrobial resistance genes (coverage and identity > 90%) on each sample.


Select the database:
Resfinder
CARD
ARG-ANNOT


Back to index

Virulence genes

The search of virulence genes was performed by screening the genome against Virulence Factors Data Base (VFDB, L. Chen et al., 2005) by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing TORMES output directory.


Field Description
Contig Contig name where the virulence gene was found
Start Start position of the virulence gene within the contig
End End position of the virulence gene within the contig
Gene Virulence gene
Gaps Gaps in subject (genome) and query (virulence gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the virulence gene
Product Virulence gene product


Select the sample

72855
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_4 156550 158574 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_2 43242 44252 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_2 1714697 1715512 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1715509 1716309 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1716782 1717951 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1717970 1719436 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1719506 1722016 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1722040 1722891 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1722918 1725371 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1725389 1725787 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1725846 1726985 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1727011 1728354 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1728354 1729166 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 469030 470268 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 470265 472409 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 468046 469029 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 475688 475894 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 472421 475402 cylM 0/0 100 99 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 476013 476297 cylR1 0/0 100 99 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 476298 476498 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 475463 475654 cylS 0/0 100 99 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 145895 149206 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_4 149210 150640 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_4 150637 152520 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 71341 75266 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 509168 513087 EF0485 3/4 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 177285 180299 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 1214886 1219004 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 2040193 2041119 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_4 865913 866644 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_4 865096 865824 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_4 863756 865099 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 813771 819734 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_2 1701958 1706913 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_4 940468 943695 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_4 861989 863521 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_4 861086 861940 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_4 152614 153468 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
72882
## [1] "No virulence genes from VFDB database were found"
72927
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 181882 185688 asa1 0/0 98 92 NP_816972 (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 932421 933431 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 2247365 2248180 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2246568 2247368 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2049493 2052804 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2048061 2049489 ebpB 1/2 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2046181 2048064 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 793532 796546 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1203613 1204539 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1371841 1372572 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1372661 1373389 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1373386 1374729 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 121823 127786 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1374964 1376496 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1376545 1377399 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2045233 2046087 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
73054
## [1] "No virulence genes from VFDB database were found"
73201
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 785934 786944 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 2109932 2110747 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2109135 2109935 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 20988 22182 cylA 0/0 96 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 22179 24323 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 18892 19875 cylI 0/0 100 100 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 27602 27808 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 24335 27316 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 27927 28211 cylR1 0/0 100 98 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 28212 28412 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 27377 27568 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 926478 929789 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 929793 931223 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 931220 933103 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 631580 634594 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2525029 2529147 EF3023 0/0 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1846908 1847834 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1595877 1596608 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1595060 1595788 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1593720 1595063 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 141918 147881 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1591953 1593485 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 54999 58585 prgB/asc10 2/2 92 96 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1591050 1591904 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 933197 934041 srtC 0/0 99 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
73338
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2225470 2227494 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 2421017 2422027 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 894917 895732 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 895729 896529 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 897002 898171 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 898190 899656 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 899726 902236 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 902260 903111 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 903138 905591 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 905609 906007 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 906066 907205 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 907231 908574 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 908574 909386 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2849568 2850806 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2850803 2852947 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2848584 2849567 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2856226 2856432 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2852959 2855940 cylM 0/0 100 99 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2856551 2856835 cylR1 0/0 100 99 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2856836 2857036 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2856001 2856192 cylS 0/0 100 99 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2234838 2238149 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2233404 2234834 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2231524 2233407 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 30200 34117 EF0149 0/0 100 100 NP_813951 (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2889734 2893653 EF0485 3/4 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 5267 9192 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2555060 2558074 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 393773 397891 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1280965 1281891 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1517400 1518131 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1518220 1518948 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1518945 1520288 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 3190465 3196428 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 882178 887133 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 1440348 1443575 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1520523 1522055 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1522104 1522958 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2230576 2231430 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
73611
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 1296563 1298728 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_2 831114 834285 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 736889 738871 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_1 20231 21205 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
74016
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 1777855 1780020 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_2 1273015 1276186 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 1178790 1180772 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_2 2479016 2479990 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
74089
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 20341 24231 asa1 0/0 100 97 NP_816972 (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2818462 2819472 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1511441 1512256 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1512253 1513053 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2635236 2638547 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2633802 2635232 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2631922 2633805 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 16588 19602 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1785966 1786892 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1940011 1940739 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1940736 1942079 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 716036 721999 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1942314 1943846 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1943895 1944749 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2630974 2631828 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
75125
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_3 2768712 2770877 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_3 2304785 2307956 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_3 2210560 2212542 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_3 635586 636560 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
75176
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1871734 1873899 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_1 1407808 1410979 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1313583 1315565 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_1 2571112 2572086 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
75411
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 446318 447328 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1763875 1764690 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1763078 1763878 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2941086 2942324 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2938945 2941089 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2942325 2943308 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2935460 2935666 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2935952 2938933 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2935057 2935341 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2934856 2935056 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2935700 2935891 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 606645 609956 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 609960 611390 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 611387 613270 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2551295 2555212 EF0149 0/0 100 100 NP_813951 (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2901001 2904918 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 63358 67283 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2198774 2202636 EF3023 0/0 94 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1498840 1499766 efaA 0/0 100 99 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2599752 2605715 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1339204 1342431 fss3 0/0 100 99 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1289080 1290612 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1288177 1289031 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 613364 614208 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
75520
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2290544 2292568 ace 0/0 100 97 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 2447152 2448162 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1208889 1209704 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1209701 1210501 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2302799 2306110 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2301365 2302795 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2299485 2301368 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 405 4321 EF0485 2/2 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2581544 2584558 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1449946 1450872 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1606663 1607394 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1607483 1608211 fsrB 0/0 100 98 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1608208 1609551 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1609787 1611319 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 108605 112497 prgB/asc10 5/32 99 94 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1611368 1612222 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2298537 2299391 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
75582
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1691838 1693862 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 1846749 1847759 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 413799 414614 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 414611 415411 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 415884 417053 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 417072 418538 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 418608 421118 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 421142 421993 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 422020 424473 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 424491 424889 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 424948 426087 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 426113 427456 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 427456 428268 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1701206 1704517 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1699772 1701202 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1697892 1699775 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2300073 2303966 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1980793 1983807 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 3032024 3036142 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 749778 750704 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 983529 984260 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 984349 985077 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 985074 986417 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2610210 2616173 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 401060 406015 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 906478 909705 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 986652 988184 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 988233 989087 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1696944 1697798 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
75715
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 16664 20554 asa1 0/0 100 100 NP_816972 (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2020512 2021522 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 429899 430714 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 429102 429902 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 56154 57392 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 54013 56157 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 57393 58376 cylI 0/0 100 100 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 50528 50734 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 51020 54001 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 50125 50409 cylR1 0/0 100 98 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 49924 50124 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 50768 50959 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2162229 2165540 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2165544 2166974 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2166971 2168854 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1884921 1887935 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 155260 156186 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2861562 2862290 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2860222 2861565 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1220161 1226124 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 2858455 2859987 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 2857552 2858406 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2168948 2169802 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
75746
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_9 1227240 1229405 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_9 1690160 1693331 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_9 1785574 1787556 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_9 521116 522090 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
75840
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 534443 536467 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 339909 340919 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1836256 1837071 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1835459 1836259 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1833817 1834986 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1832332 1833798 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1829752 1832262 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1828877 1829728 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1826397 1828850 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1825981 1826379 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1824783 1825922 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1823414 1824757 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1822602 1823414 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 3118983 3120221 cylA 0/0 100 99 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 3116842 3118986 cylB 0/0 100 98 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 3120222 3121205 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 3113357 3113563 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 3113849 3116830 cylM 0/0 100 99 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 3112954 3113238 cylR1 0/0 100 99 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 3112753 3112953 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 3113597 3113788 cylS 0/0 100 99 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 523788 527099 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 527103 528533 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 528530 530413 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 3076136 3080055 EF0485 3/4 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 203862 206876 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2350849 2354967 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1469037 1469963 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1243737 1244468 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1242920 1243648 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1241580 1242923 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2769489 2775452 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1844855 1849810 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 1316501 1319728 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1239813 1241345 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1238910 1239764 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 530507 531361 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
76174
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_7 683947 686112 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_7 1275661 1277643 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_7 2655457 2656431 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
76302
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1957623 1958633 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 578909 579724 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 579721 580521 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 580994 582162 cpsC 0/0 100 99 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 583250 584716 cpsD 0/0 100 99 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 584786 587296 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 587320 588171 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 588198 590651 cpsG 0/0 100 99 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 590669 591067 cpsH 0/0 100 99 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 591126 592265 cpsI 0/0 100 99 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 592291 593634 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 593634 594446 cpsK 0/0 100 99 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1809484 1812795 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1808050 1809480 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1806170 1808053 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2093402 2096416 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 894616 895542 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1093203 1093934 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1094023 1094751 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1094748 1096091 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2620474 2626437 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 566171 571126 fss2 0/0 100 98 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 1096326 1097858 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1097907 1098761 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1805232 1806076 srtC 0/0 99 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
76304
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2557414 2558424 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1245185 1246000 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1245997 1246797 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2371595 2374906 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2370161 2371591 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2368281 2370164 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2691003 2694017 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1519712 1520638 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1675282 1676010 fsrB 0/0 100 98 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1676007 1677350 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 448248 454211 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1677585 1679117 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1679166 1680020 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2367333 2368187 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
76646
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 144125 145135 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1623701 1624516 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1624513 1625313 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1625786 1626955 cpsC 0/0 100 98 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1626974 1628440 cpsD 0/0 100 99 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1628510 1631020 cpsE 0/0 100 99 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1631044 1631895 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1631922 1634375 cpsG 0/0 100 99 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1634393 1634791 cpsH 0/0 100 99 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1634850 1635989 cpsI 0/0 100 99 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1636015 1637358 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1637358 1638170 cpsK 0/0 100 99 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2738590 2741901 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2737156 2738586 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2735276 2737159 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1179082 1182944 EF3023 0/0 94 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1905952 1906878 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2062130 2062861 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2062950 2063678 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2063675 2065018 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 775855 781818 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 2065253 2066785 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 42473 46390 prgB/asc10 2/2 100 96 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2066834 2067688 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2734338 2735182 srtC 0/0 99 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
76746
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 763238 765262 ace 0/0 100 98 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 607431 608441 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1883735 1884550 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1882938 1883738 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 197384 198367 cylI 2/2 100 96 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 749995 753306 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 753310 754740 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 754737 756620 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 471503 474517 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2341933 2346066 EF3023 1/15 100 98 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1625852 1626778 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1431132 1431863 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1430315 1431043 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1428975 1430318 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2741390 2747353 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1427208 1428740 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1426306 1427160 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 756714 757558 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
76793
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1249405 1251429 ace 0/0 100 97 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 1094533 1095543 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 2331244 2332059 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2330447 2331247 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2328805 2329974 cpsC 0/0 100 98 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2327320 2328786 cpsD 0/0 100 98 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2324740 2327250 cpsE 0/0 100 97 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2322218 2324671 cpsG 0/0 100 99 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2321802 2322200 cpsH 0/0 100 98 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2320604 2321743 cpsI 0/0 100 99 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2319235 2320578 cpsJ 0/0 100 99 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2318423 2319235 cpsK 0/0 100 99 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1236573 1239881 ebpA 1/3 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1239885 1241315 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1241312 1243195 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 958782 961796 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 57994 62112 EF3023 0/0 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2049946 2050872 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1894963 1895694 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1894146 1894874 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1892806 1894149 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 447696 453657 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1891039 1892571 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1890136 1890990 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1243289 1244133 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
76952
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 910427 911437 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 2256689 2257504 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2255892 2256692 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2254250 2255419 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2252765 2254231 cpsD 0/0 100 99 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2250186 2252695 cpsE 0/0 100 99 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2247663 2250116 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2247247 2247645 cpsH 0/0 100 97 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2246050 2247188 cpsI 1/1 100 98 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2244681 2246024 cpsJ 0/0 100 99 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2243869 2244681 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1069583 1072894 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1072898 1074328 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1074325 1076208 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 18462 22378 EF0485 2/2 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2676626 2680744 EF3023 0/0 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1987393 1988319 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 147934 153897 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1830517 1833744 fss3 0/0 100 99 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1779387 1780919 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1778484 1779338 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1076302 1077156 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
76967
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_3 1630226 1632391 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_3 2093146 2096317 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_3 2188560 2190542 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_3 933930 934904 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
76985
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 421065 422075 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1729796 1730611 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1728999 1729799 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 580220 583531 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 583535 584965 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 584962 586845 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2227723 2231841 EF3023 0/0 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1495891 1496817 efaA 0/0 100 99 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2624276 2630239 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1339533 1342760 fss3 0/0 100 99 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1288403 1289935 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1287500 1288354 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 586939 587793 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
77019
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 395297 396307 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1775451 1776266 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1774654 1775454 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 50922 52160 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 52157 54301 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 49938 50921 cylI 0/0 100 100 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 57580 57786 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 54313 57294 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 57905 58189 cylR1 0/0 100 99 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 58190 58390 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 57355 57546 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 537745 541056 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 541060 542490 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 542487 544370 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1420910 1421836 efaA 0/0 100 99 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2609147 2615110 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1263687 1266914 fss3 0/0 100 99 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1212666 1214198 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 19206 23084 prgB/asc10 15/47 99 91 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 5264 9213 prgB/asc10 14/32 100 95 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1211763 1212617 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 544464 545318 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
77340
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_10 2392370 2394535 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_10 1923866 1927037 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_10 1829642 1831624 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_10 253187 254161 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
77364
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1624101 1626125 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 1779012 1780022 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 348428 349243 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 349240 350040 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 350513 351682 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 351701 353167 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 353237 355747 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 355771 356622 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 356649 359102 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 359120 359518 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 359577 360716 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 360742 362085 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 362085 362897 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1633469 1636780 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1632035 1633465 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1630155 1632038 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2235000 2238893 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1914388 1917402 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2964055 2968173 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 684408 685334 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 917123 917854 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 917943 918671 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 918668 920011 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2542240 2548203 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 335689 340644 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 840072 843299 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 920246 921778 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 921827 922681 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1629207 1630061 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
77448
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 1444393 1446558 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_2 975943 979114 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 881719 883701 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_2 2145293 2146267 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
77566
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_6 117077 118087 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_4 359067 359882 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 359879 360679 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 1526461 1529772 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_4 1525027 1526457 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_4 1523147 1525030 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_9 2305 6221 EF0485 2/2 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_5 43869 46883 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_3 579731 583849 EF3023 0/0 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_4 682794 683720 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_4 847740 848471 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_4 848560 849288 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_4 849285 850628 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_3 179569 185532 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_4 850863 852395 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_4 852444 853298 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_4 1522199 1523053 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
77655
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_7 41942 43966 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_5 46256 47266 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_2 127947 128762 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 128759 129559 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 130032 131201 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 131220 132686 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 132756 135266 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 135290 136141 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 136168 138621 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 138639 139037 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 139096 140235 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 140261 141604 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 141604 142416 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 182767 184005 cylA 0/0 100 99 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 180626 182770 cylB 0/0 100 98 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 184006 184989 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 177141 177347 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 177633 180614 cylM 0/0 100 99 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 176738 177022 cylR1 0/0 100 99 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 176537 176737 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 177381 177572 cylS 0/0 100 99 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_7 31287 34598 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_7 34602 36032 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_7 36029 37912 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_4 139920 143839 EF0485 3/4 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_5 180299 183313 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_6 127607 131725 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 495347 496273 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 257384 258115 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 256567 257295 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 255227 256570 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_3 137043 143006 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_2 115208 120163 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 331938 335165 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 253460 254992 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 252557 253411 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_7 38006 38860 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
77771
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 22955 26761 asa1 0/0 98 97 NP_816972 (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 722676 723686 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_3 2047899 2048714 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 2047102 2047902 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 304487 305725 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 302346 304490 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 305726 306709 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 298861 299067 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 299353 302334 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 298458 298742 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 298257 298457 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 299101 299292 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 883002 886313 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 886317 887747 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 887744 889627 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 22 3947 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 264402 268319 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 2560607 2564469 EF3023 0/0 94 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_3 1784571 1785497 efaA 0/0 100 99 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_3 2945525 2951488 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_3 1624940 1628167 fss3 0/0 100 99 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_3 1574814 1576346 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_3 1573911 1574765 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_3 889721 890565 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
77804
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 412321 413331 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1766831 1767646 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1766034 1766834 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1764392 1765561 cpsC 0/0 100 99 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1762907 1764373 cpsD 0/0 100 99 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1760327 1762837 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1759452 1760303 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1756972 1759425 cpsG 0/0 100 99 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1756556 1756954 cpsH 0/0 100 99 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1755358 1756497 cpsI 0/0 100 99 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1753989 1755332 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1753177 1753989 cpsK 0/0 100 99 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 556822 560133 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 560137 561567 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 561564 563447 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 274536 277550 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1453210 1454136 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1287413 1288144 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1286596 1287324 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1285256 1286599 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2574873 2580836 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1775429 1780384 fss2 0/0 100 98 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 1283489 1285021 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1282586 1283440 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 563541 564385 srtC 0/0 99 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
78036
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1369773 1371797 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 1180296 1181306 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 2549833 2550648 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2549036 2549836 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 704151 705389 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 702010 704154 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 705390 706373 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 698525 698731 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 699017 701998 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 698122 698406 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 697921 698121 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 698765 698956 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1359118 1362429 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1362433 1363863 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1363860 1365743 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 664160 668077 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 39589 43514 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1044358 1047372 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2266265 2267191 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2074714 2075445 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2073897 2074625 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2072557 2073900 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 345807 351770 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 2146542 2149769 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 2070790 2072322 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 2069887 2070741 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1365837 1366691 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
78039
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_8 1970786 1972951 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_8 2438851 2442022 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_8 2534264 2536246 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_8 1269548 1270522 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
78041
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 213556 215721 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_2 2568055 2571226 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 2473831 2475813 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_2 910285 911259 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
78203
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_4 436988 439153 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_4 902953 906124 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_4 998367 1000349 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_4 2580919 2581893 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
78272
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_14 458869 459879 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_14 1703904 1704719 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_14 1703107 1703907 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_14 35804 37042 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_14 33663 35807 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_14 37043 38026 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_14 30178 30384 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_14 30670 33651 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_14 29775 30059 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_14 29574 29774 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_14 30418 30609 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_14 602469 605780 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_14 605784 607214 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_14 607211 609094 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_14 2809457 2813374 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_7 403 4328 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_14 2157363 2161482 EF3023 1/1 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_14 1418411 1419337 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_14 42690 48311 esp 0/0 100 100 AAD09858 (esp) Enterococcal surface protein; Esp [Esp (VF0353)] [Enterococcus faecalis str. MMH594]
contig_14 1261621 1262352 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_14 1260804 1261532 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_14 1259464 1260807 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_14 1257697 1259229 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_9 406 4335 prgB/asc10 13/14 100 94 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_14 1256794 1257648 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_14 609188 610042 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
78438
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 469272 471437 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_1 22121 24103 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_1 1168086 1169060 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
78506
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 2605655 2607679 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_2 2797931 2798941 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_2 1328946 1329761 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1329758 1330558 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1331031 1332200 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1332219 1333685 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1333755 1336265 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1336289 1337140 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1337167 1339620 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1339638 1340036 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1340095 1341234 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1341260 1342603 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1342603 1343415 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2615023 2618334 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 2613589 2615019 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 2611709 2613592 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 55672 59565 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 2933307 2936321 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 776649 780767 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 1664926 1665852 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_2 1898677 1899408 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1899497 1900225 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1900222 1901565 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 353502 359465 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_2 1316207 1321162 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_2 1821626 1824853 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 1901800 1903332 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 1903381 1904235 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_2 2610761 2611615 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
78507
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1159457 1160467 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 2464404 2465219 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2463607 2464407 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1301173 1304484 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1304488 1305918 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1305915 1307798 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1023853 1026867 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 121408 125526 EF3023 0/0 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2139182 2140108 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1981326 1982057 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1980509 1981237 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1979169 1980512 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 514804 520767 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1977402 1978934 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1976499 1977353 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1307892 1308746 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
78555
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_3 1788034 1790199 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_3 1321063 1324234 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_3 1226838 1228820 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_3 2527260 2528234 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
78894
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 2653180 2655345 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_2 282543 285714 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 377956 379938 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_2 1951689 1952663 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
79576
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 656975 658999 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_2 467248 468258 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_2 1914791 1915606 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1913994 1914794 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 3267007 3268245 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 3268246 3269229 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 3260049 3260255 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 3260541 3263522 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 3259646 3259930 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 3259445 3259645 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 3260289 3260480 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 646319 649630 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 649634 651064 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 651061 652944 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 39590 43515 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 3222788 3226705 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_5 48821 52737 EF0485 2/2 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 331311 334325 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 1594198 1595124 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_2 1383 7004 esp 0/0 100 100 AAD09858 (esp) Enterococcal surface protein; Esp [Esp (VF0353)] [Enterococcus faecalis str. MMH594]
contig_2 1363249 1363980 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1362432 1363160 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1361092 1362435 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 2904343 2910306 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_2 1435077 1438304 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 1359325 1360857 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 1358422 1359276 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_2 653038 653892 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
79578
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1792684 1794708 ace 0/0 100 96 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 1947626 1948636 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 661179 661994 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 661991 662791 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1805245 1808556 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1803811 1805241 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1801931 1803814 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2081276 2084290 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 928081 929007 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1123093 1123824 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1123913 1124641 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1124638 1125982 fsrC 1/1 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2597254 2603217 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1126217 1127747 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 48034 51951 prgB/asc10 2/2 100 96 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1127798 1128652 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1800993 1801837 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
79579
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 619060 621084 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 465163 466173 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1966113 1966928 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1965316 1966116 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1963674 1964843 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1962189 1963655 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1959609 1962119 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1958734 1959585 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1956254 1958707 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1955838 1956236 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1954640 1955779 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1953271 1954614 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1952459 1953271 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 36737 37975 cylA 0/0 100 99 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 34596 36740 cylB 0/0 100 98 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 37976 38959 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 31111 31317 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 31603 34584 cylM 0/0 100 99 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 30708 30992 cylR1 0/0 100 99 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 30507 30707 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 31351 31542 cylS 0/0 100 99 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 608405 611716 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 611720 613150 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 613147 615030 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 3244333 3248252 EF0485 3/4 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 72007 75932 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 329116 332130 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2481641 2485758 EF3023 1/1 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1599964 1600890 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1365584 1366315 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1364767 1365495 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1363427 1364770 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2898886 2904849 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1974712 1979667 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 1442803 1446030 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1361660 1363192 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1360757 1361611 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 615124 615978 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
79707
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 493491 497382 asa1 1/1 100 97 NP_816972 (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1679439 1680449 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 145026 145841 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 144229 145029 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1846709 1850020 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1850024 1851454 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1851451 1853334 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 536152 540045 EF0485 3/30 99 94 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1213111 1216973 EF3023 0/0 94 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2710806 2711732 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2559616 2560347 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2558799 2559527 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2557459 2558802 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 831251 837214 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 2555692 2557224 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 2554789 2555643 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1853428 1854282 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
79867
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2648753 2650777 ace 0/0 100 97 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 107895 108905 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1542420 1543235 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1543232 1544032 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1544505 1545674 cpsC 0/0 100 97 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1545693 1547159 cpsD 0/0 100 99 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1547229 1549739 cpsE 0/0 100 98 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1549808 1552261 cpsG 0/0 100 99 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1552279 1552677 cpsH 0/0 100 98 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1552736 1553875 cpsI 0/0 100 99 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1553901 1555244 cpsJ 0/0 100 98 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1555244 1556056 cpsK 0/0 100 99 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2660299 2663610 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2658865 2660295 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2656985 2658868 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 241655 244669 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1125390 1129508 EF3023 0/0 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1821195 1822121 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2010017 2010748 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2010837 2011565 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2011562 2012905 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2013140 2014672 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 2014721 2015575 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2656047 2656891 srtC 0/0 99 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80213
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2613726 2615750 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 2768636 2769646 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1337016 1337831 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1337828 1338628 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1339101 1340270 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1340289 1341755 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1341825 1344335 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1344359 1345210 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1345237 1347690 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1347708 1348106 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1348165 1349304 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1349330 1350673 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1350673 1351485 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2623094 2626405 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2621660 2623090 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2619780 2621663 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 57003 60896 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2902680 2905694 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 784695 788813 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1672996 1673922 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1908079 1908810 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1908899 1909627 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1909624 1910967 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 362911 368874 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1324277 1329232 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 1829696 1832923 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1911202 1912734 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1912783 1913637 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2618832 2619686 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80275
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 19274 23080 asa1 0/0 98 97 NP_816972 (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 1693707 1694717 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_3 415868 416683 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 416680 417480 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 13233 14216 cylI 2/2 100 96 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 1545900 1549211 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 1544466 1545896 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 1542586 1544469 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 2885992 2889909 EF0485 0/0 100 97 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 1833705 1836719 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_3 678913 679839 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_3 873752 874483 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_3 874572 875300 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_3 875297 876640 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_3 2605345 2611308 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_3 876875 878407 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 74196 78113 prgB/asc10 2/2 100 96 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 878456 879310 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_3 1541638 1542492 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80343
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 685892 687916 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 876382 877392 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 2705520 2706335 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2706332 2707132 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1354406 1355644 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1355641 1357785 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1353422 1354405 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1361064 1361270 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1357797 1360778 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1361389 1361673 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1361674 1361874 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1360839 1361030 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 695260 698571 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 693826 695256 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 691946 693829 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1394614 1398531 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 5268 9193 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1010316 1013330 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2948083 2949009 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1341525 1347146 esp 0/0 100 100 AAD09858 (esp) Enterococcal surface protein; Esp [Esp (VF0353)] [Enterococcus faecalis str. MMH594]
contig_1 3139827 3140558 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 3140647 3141375 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 3141372 3142715 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1711011 1716974 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 3065503 3068730 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 3142950 3144482 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 3144531 3145385 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 690998 691852 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80344
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2249580 2251604 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 2017908 2018918 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 280893 281708 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 280096 280896 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 278454 279623 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 276969 278435 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 274389 276899 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 273514 274365 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 271034 273487 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 270618 271016 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 269420 270559 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 268051 269394 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 267239 268051 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1581181 1582419 cylA 0/0 100 99 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1579040 1581184 cylB 0/0 100 98 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1582420 1583403 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1575555 1575761 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1576047 1579028 cylM 0/0 100 99 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1575152 1575436 cylR1 0/0 100 99 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1574951 1575151 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1575795 1575986 cylS 0/0 100 99 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2199925 2203236 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2203240 2204670 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2204667 2206550 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1538334 1542253 EF0485 3/4 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1881863 1884877 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 800601 804719 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 3196995 3197921 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2958945 2959677 fsrA 1/1 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2958128 2958856 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2956788 2958131 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1226657 1232620 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 289492 294447 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 3034834 3038061 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 2955021 2956553 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_5 44300 48226 prgB/asc10 3/11 100 96 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2954118 2954972 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2206644 2207498 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80411
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_3 2233889 2235913 ace 0/0 100 97 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 47494 51384 asa1 0/0 100 96 NP_816972 (asa1) aggregation substance Asa1 [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 2045337 2046347 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_3 404664 405479 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 403867 404667 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 12619 13857 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 13854 15998 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 11635 12618 cylI 0/0 100 100 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 19277 19483 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 16010 18991 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 19602 19886 cylR1 0/0 100 99 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 19887 20087 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 19052 19243 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_3 2186790 2190101 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 2190105 2191535 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 2191532 2193415 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 1909737 1912751 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_3 175463 176390 efaA 1/1 100 99 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_3 1263776 1269739 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_3 20117 23344 fss3 0/0 100 99 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_3 2895931 2897463 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_3 2895028 2895882 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_3 2193509 2194363 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80564
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 2613817 2615841 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_2 2768728 2769738 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_2 1337092 1337907 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1337904 1338704 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1339177 1340346 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1340365 1341831 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1341901 1344411 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1344435 1345286 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1345313 1347766 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1347784 1348182 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1348241 1349380 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1349406 1350749 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1350749 1351561 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2623185 2626496 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 2621751 2623181 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 2619871 2621754 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 57004 60897 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 2902772 2905786 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 784771 788889 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 1673066 1673992 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_2 1908149 1908880 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1908969 1909697 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1909694 1911037 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 362912 368875 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_2 1324353 1329308 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_2 1829766 1832993 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 1911272 1912804 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 1912853 1913707 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_2 2618923 2619777 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80725
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_7 1255575 1257740 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_7 814058 816040 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_7 1984132 1985106 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
80740
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1108796 1109806 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 2362337 2363152 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2361540 2362340 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1252273 1255584 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1255588 1257018 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1257015 1258898 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 972964 975978 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2114046 2114972 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1917875 1918606 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1917058 1917786 fsrB 0/0 100 98 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1915720 1917061 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 498689 504652 fss1 0/0 100 97 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1913951 1915483 gelE 0/0 100 98 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1913048 1913902 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1258992 1259846 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80797
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 758836 760860 ace 0/0 100 98 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 603031 604041 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1879964 1880779 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1879167 1879967 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 197379 198362 cylI 2/2 100 96 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 745594 748905 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 748909 750339 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 750336 752219 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 467103 470117 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1621415 1622341 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1426719 1427450 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1425902 1426630 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1424562 1425905 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2765094 2771057 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1422795 1424327 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_4 31392 35309 prgB/asc10 2/2 100 95 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1421893 1422747 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 752313 753157 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80798
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_4 876817 878841 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_4 645146 646156 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_4 2189047 2189862 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2188250 2189050 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2186608 2187777 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2185123 2186589 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2182543 2185053 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2181668 2182519 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2179188 2181641 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2178772 2179170 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2177574 2178713 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2176205 2177548 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 2175393 2176205 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 3155568 3156806 cylA 0/0 100 99 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 3153427 3155571 cylB 0/0 100 98 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 3156807 3157790 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 3149942 3150148 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 3150434 3153415 cylM 0/0 100 99 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 3149539 3149823 cylR1 0/0 100 99 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 3149338 3149538 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 3150182 3150373 cylS 0/0 100 99 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_4 827162 830473 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_4 830477 831907 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_4 831904 833787 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_4 3112721 3116640 EF0485 3/4 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_4 175498 178512 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_4 471378 475496 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_4 1822897 1823823 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_4 1586181 1586913 fsrA 1/1 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_4 1585364 1586092 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_4 1584024 1585367 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_4 2801044 2807007 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_4 2197646 2202601 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_4 1660737 1663964 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_4 1582257 1583789 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 41114 45040 prgB/asc10 3/11 100 96 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_4 1581354 1582208 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_4 833881 834735 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80829
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 758836 760860 ace 0/0 100 98 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 603031 604041 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1879961 1880776 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1879164 1879964 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 197379 198362 cylI 2/2 100 96 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 745594 748905 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 748909 750339 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 750336 752219 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 467103 470117 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1621413 1622339 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1426717 1427448 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1425900 1426628 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1424560 1425903 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 2765090 2771053 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1422793 1424325 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 17403 21320 prgB/asc10 2/2 100 95 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1421891 1422745 sprE 0/0 100 99 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 752313 753157 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
80889
## [1] "No virulence genes from VFDB database were found"
81048
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_9 79917 80927 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_99 12699 13514 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_99 11902 12702 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_84 15809 19120 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_84 14375 15805 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_84 12495 14378 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_57 91139 95028 EF0485 23/44 98 94 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_102 5047 8909 EF3023 0/0 94 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_89 132207 133133 efaA 0/0 100 99 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_57 39711 45679 fss1 5/5 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_53 1901 5128 fss3 0/0 100 99 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_51 14495 16027 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_51 16076 16930 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_84 11557 12401 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
81314
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2257012 2259036 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 2410138 2411148 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1079971 1080786 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1080783 1081583 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2857467 2858705 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2858702 2860846 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2856483 2857466 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2864125 2864331 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2860858 2863839 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2864450 2864734 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2864735 2864935 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2863900 2864091 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2266380 2269691 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2264946 2266376 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2263066 2264949 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2897675 2901592 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_4 36436 40361 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2544071 2547085 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1322352 1323278 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2844586 2850207 esp 0/0 100 100 AAD09858 (esp) Enterococcal surface protein; Esp [Esp (VF0353)] [Enterococcus faecalis str. MMH594]
contig_1 1553363 1554094 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1554183 1554911 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1554908 1556251 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 125651 131614 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1479039 1482266 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1556486 1558018 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1558067 1558921 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2262118 2262972 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
81378
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1278760 1280925 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_1 1694609 1697780 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1790660 1792642 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_1 520548 521522 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
81440
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1803203 1805227 ace 0/0 100 97 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 1958762 1959772 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 696683 697498 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 697495 698295 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 698768 699937 cpsC 0/0 100 97 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 699956 701422 cpsD 0/0 100 99 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 701492 704002 cpsE 0/0 100 98 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 704071 706524 cpsG 0/0 100 99 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 706542 706940 cpsH 0/0 100 98 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 706999 708138 cpsI 0/0 100 99 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 708164 709507 cpsJ 0/0 100 98 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 709507 710319 cpsK 0/0 100 99 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1814749 1818060 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1813315 1814745 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1811435 1813318 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2092524 2095538 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 243052 247170 EF3023 0/0 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 975580 976506 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1164470 1165201 fsrA 0/0 100 99 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1165290 1166018 fsrB 0/0 100 99 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1166015 1167358 fsrC 0/0 100 99 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1167593 1169125 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 8402 12319 prgB/asc10 2/2 100 96 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 1169174 1170028 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 1810497 1811341 srtC 0/0 99 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
81456
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 409022 410032 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1734190 1735005 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1733393 1734193 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2978787 2980025 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2976646 2978790 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2980026 2981009 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2973161 2973367 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2973653 2976634 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2972758 2973042 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2972557 2972757 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 2973401 2973592 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 569348 572659 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 572663 574093 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 574090 575973 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2673290 2677207 EF0149 0/0 100 100 NP_813951 (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2938702 2942619 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 63358 67283 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2204209 2208071 EF3023 0/0 94 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1470863 1471789 efaA 0/0 100 99 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 2622788 2628751 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1311231 1314458 fss3 0/0 100 99 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1261105 1262637 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1260202 1261056 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 576067 576911 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
81863
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 544924 546948 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_2 391027 392037 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_2 1822837 1823652 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1822040 1822840 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1820398 1821567 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1818913 1820379 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1816333 1818843 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1815458 1816309 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1812978 1815431 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1812562 1812960 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1811364 1812503 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1809995 1811338 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1809183 1809995 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 534269 537580 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 537584 539014 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 539011 540894 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1161534 1165427 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 255025 258039 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 432525 436643 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 1486747 1487673 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_2 1251860 1252591 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1251043 1251771 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1249703 1251046 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 853556 859519 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_2 1831436 1836391 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_2 1326415 1329642 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 1247936 1249468 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_3 1 3789 prgB/asc10 0/0 97 96 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 1247033 1247887 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_2 540988 541842 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
81956
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 1256853 1257863 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 2555455 2556270 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2554658 2555458 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2553016 2554185 cpsC 0/0 100 99 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2551568 2552997 cpsD 0/0 97 99 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2547265 2549775 cpsE 0/0 100 99 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2546390 2547241 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2543910 2546363 cpsG 0/0 100 99 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2543494 2543892 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2542296 2543435 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2540927 2542270 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2540115 2540927 cpsK 0/0 100 99 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 823085 824323 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 820944 823088 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 824324 825307 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 864478 865461 cylI 2/2 100 96 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 817459 817665 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 817951 820932 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 817056 817340 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 816855 817055 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 817699 817890 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_1 1417179 1420490 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1420494 1421924 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1421921 1423804 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 783001 786918 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 62823 66685 EF3023 0/0 94 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 2264858 2265784 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 496519 502482 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 2564054 2569006 fss2 1/3 100 97 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 1423898 1424742 srtC 0/0 99 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
81958
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_7 1424776 1426941 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_4 651683 652498 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 652495 653295 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 653768 654937 cpsC 0/0 100 99 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_4 654956 656385 cpsD 0/0 97 99 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_6 248807 250045 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_6 246666 248810 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_6 250046 251029 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_6 243181 243387 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_6 243673 246654 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_6 242778 243062 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_6 242577 242777 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_6 243421 243612 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_6 208723 212640 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_4 235249 239111 EF3023 0/0 94 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_16 190249 196212 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_4 638947 643899 fss2 1/3 100 97 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_7 831824 833806 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_7 2181283 2182257 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
81973
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 986935 988959 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_2 1178219 1179229 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_2 2838802 2839617 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2839614 2840414 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2840887 2842056 cpsC 0/0 100 98 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2842075 2843541 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2843611 2846121 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2846145 2846996 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2847023 2849476 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2849494 2849892 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2849951 2851090 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2851116 2852459 cpsJ 0/0 100 99 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2852459 2853271 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 996303 999614 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 994869 996299 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 992989 994872 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 1313337 1316351 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 102326 103252 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_2 1911189 1917152 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_2 217614 220841 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 992041 992895 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
82126
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_5 397943 400108 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_5 2697726 2699708 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_5 1126902 1127876 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
82128
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 865742 867766 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_2 713630 714640 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_2 2004944 2005759 cpsA 0/0 100 99 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2004147 2004947 cpsB 0/0 100 99 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 235632 236870 cylA 0/0 100 100 AAM75253 (cylA) cytolysin activator [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 233491 235635 cylB 0/0 100 100 AAM75252 (cylB) ABC-type transporter [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 236871 237854 cylI 0/0 100 97 AAM75254 (cylI) cytolysin immunity protein [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 230006 230212 cylL 0/0 100 100 AAM75249 (cylL) CylL; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 230498 233479 cylM 0/0 100 100 AAM75251 (cylM) CylM; cytolysin subunit modifier [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 229603 229887 cylR1 0/0 100 100 AAM75248 (cylR1) cytolysin regulator R1 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 229402 229602 cylR2 0/0 100 100 AAM75247 (cylR2) cytolysin regulator R2 [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 230246 230437 cylS 0/0 100 100 AAM75250 (cylS) CylS; cytolysin subunit [Cytolysin (VF0356)] [Enterococcus faecalis str. MMH594]
contig_2 855087 858398 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 858402 859832 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 859829 861712 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 192745 196662 EF0485 0/0 100 100 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_6 1333 5258 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 577694 580708 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 1762258 1763184 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_2 1570706 1571437 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1569889 1570617 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 1568549 1569892 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 2994312 3000275 fss1 0/0 100 98 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_2 1642534 1645761 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 1566782 1568314 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 1565879 1566733 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_2 861806 862660 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
82591
## [1] "No virulence genes from VFDB database were found"
82961
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_4 1385979 1388144 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_4 1842195 1845366 fss3 0/0 98 91 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_4 1937608 1939590 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_4 666257 667231 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
84170
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2680586 2682610 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 2873961 2874971 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1417660 1418475 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1418472 1419272 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1419694 1420863 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1420882 1422348 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1422418 1424928 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1424952 1425803 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1425830 1428283 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1428301 1428699 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1428758 1429897 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1429923 1431266 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1431266 1432078 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2689954 2693265 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2688520 2689950 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2686640 2688523 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 727535 731452 EF0149 0/0 100 100 NP_813951 (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 996757 1000650 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 3010890 3013904 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 233563 237681 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1740352 1741278 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1970945 1971676 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1971765 1972493 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1972490 1973833 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 652047 658010 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1404921 1409876 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 1897053 1900280 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1974068 1975600 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1975649 1976503 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2685692 2686546 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
85134
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2693638 2695662 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 2848548 2849558 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 1414930 1415745 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1415742 1416542 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1417015 1418184 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1418203 1419669 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1419739 1422249 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1422273 1423124 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1423151 1425604 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1425622 1426020 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1426079 1427218 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1427244 1428587 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 1428587 1429399 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2703006 2706317 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2701572 2703002 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2699692 2701575 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 727467 731384 EF0149 0/0 100 100 NP_813951 (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 995359 999252 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 11328 15253 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 2982592 2985606 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 233596 237714 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 1752076 1753002 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1982668 1983399 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 1983488 1984216 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_1 652222 658185 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 1402191 1407146 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_1 1908777 1912004 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 1987123 1988655 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 1988704 1989558 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2698744 2699598 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
85160
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 1455599 1457623 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_2 1301703 1302713 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_2 2735536 2736351 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2734739 2735539 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2733097 2734266 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2731612 2733078 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2729032 2731542 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2728157 2729008 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2725677 2728130 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2725261 2725659 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2724063 2725202 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2722694 2724037 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 2721882 2722694 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_2 1444944 1448255 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 1448259 1449689 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 1449686 1451569 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_2 263321 267238 EF0149 0/0 100 100 NP_813951 (EF0149) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_1 10006 13931 EF0485 3/11 100 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 3152029 3155922 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_2 1165655 1168669 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 756991 761109 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_2 2398280 2399206 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_2 2167883 2168614 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 2167066 2167794 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_2 336520 342483 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_2 2744135 2749090 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_2 2239279 2242506 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_2 2162627 2164159 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_2 2161724 2162578 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_2 1451663 1452517 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
85712
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 2189106 2191130 ace 0/0 100 97 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_1 2034793 2035803 bopD 0/0 100 99 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_1 461120 461935 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 460323 461123 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_1 2176247 2179558 ebpA 0/0 100 99 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2179562 2180992 ebpB 0/0 100 99 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 2180989 2182872 ebpC 1/6 100 99 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_1 1899192 1902206 EF0818 0/0 100 99 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 992289 996407 EF3023 0/0 100 99 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_1 194170 195096 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_1 1386147 1392110 fss1 0/0 100 99 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_1 35558 38785 fss3 0/0 100 99 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_1 2851689 2853221 gelE 0/0 100 99 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_1 2850786 2851640 sprE 0/0 100 98 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_1 2182966 2183820 srtC 0/0 100 99 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
86253
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_1 525922 528087 acm 0/0 100 100 AAN12397 (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
contig_1 1014958 1016940 scm 0/0 100 100 ZP_00604835 (scm) collagen adhesin protein Scm [Scm (VF0418)] [Enterococcus faecium DO]
contig_1 2199112 2200086 sgrA 0/0 100 100 ZP_00602747 (sgrA) cell wall anchored protein SgrA [SgrA (VF0540)] [Enterococcus faecium DO]
86535
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_3 618092 620116 ace 0/0 100 100 NP_814829 (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]
contig_3 424857 425867 bopD 0/0 100 100 NP_814691 (bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]
contig_3 1900013 1900828 cpsA 0/0 100 100 NP_816141 (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1899216 1900016 cpsB 0/0 100 100 NP_816140 (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1897574 1898743 cpsC 0/0 100 100 NP_816139 (cpsC) teichoic acid biosynthesis protein putative [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1896089 1897555 cpsD 0/0 100 100 NP_816138 (cpsD) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1893509 1896019 cpsE 0/0 100 100 NP_816137 (cpsE) glycosyl transferase group 2 family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1892634 1893485 cpsF 0/0 100 100 NP_816136 (cpsF) CpsF protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1890154 1892607 cpsG 0/0 100 100 NP_816135 (cpsG) MurB family protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1889738 1890136 cpsH 0/0 100 100 NP_816134 (cpsH) lipoprotein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1888540 1889679 cpsI 0/0 100 100 NP_816133 (cpsI) UDP-galactopyranose mutase [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1887171 1888514 cpsJ 0/0 100 100 NP_816132 (cpsJ) ABC transporter ATP-binding protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 1886359 1887171 cpsK 0/0 100 100 NP_816131 (cpsK) ABC transporter permease protein [Capsule (VF0361)] [Enterococcus faecalis V583]
contig_3 607437 610748 ebpA 0/0 100 100 NP_814821 (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 610752 612182 ebpB 0/0 100 100 NP_814822 (ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_3 612179 614062 ebpC 1/6 100 100 NP_814823 (ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]
contig_12 21168 25061 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 3210967 3214860 EF0485 3/30 99 95 NP_814266 (EF0485) aggregation substance [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 288821 291835 EF0818 0/0 100 100 NP_814561 (EF0818) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_3 2487694 2491812 EF3023 0/0 100 100 NP_816637 (EF3023) polysaccharide lyase family 8 [Hyaluronidase (VF0359)] [Enterococcus faecalis V583]
contig_3 1562588 1563514 efaA 0/0 100 100 NP_815739 (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]
contig_3 1327700 1328431 fsrA 0/0 100 100 NP_815519 (fsrA) response regulator [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_3 1326883 1327611 fsrB 0/0 100 100 NP_815518 (fsrB) agrBfs protein [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_3 1325543 1326886 fsrC 0/0 100 100 NP_815517 (fsrC) histidine kinase putative [Fsr (VF0360)] [Enterococcus faecalis V583]
contig_3 2902989 2908952 fss1 0/0 100 100 NP_813892 (fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
contig_3 1908612 1913567 fss2 0/0 100 100 NP_816151 (fss2) Enterococcus faecalis surface protein Fss2 fibrinogen binding protein [Fibrinogen binding protein (AI272)] [Enterococcus faecalis V583]
contig_3 1403588 1406815 fss3 0/0 100 100 NP_815578 (fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
contig_3 1323776 1325308 gelE 0/0 100 100 NP_815516 (gelE) coccolysin [Gelatinase (VF0357)] [Enterococcus faecalis V583]
contig_7 67472 71389 prgB/asc10 2/4 100 93 NP_817031 (prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]
contig_3 1322873 1323727 sprE 0/0 100 100 NP_815515 (sprE) serine proteinase V8 family [SprE (VF0358)] [Enterococcus faecalis V583]
contig_3 614156 615010 srtC 0/0 100 100 NP_814824 (srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]
barcode17
## [1] "No virulence genes from VFDB database were found"
barcode18
## [1] "No virulence genes from VFDB database were found"
barcode19
## [1] "No virulence genes from VFDB database were found"


Back to index

Citation

If using TORMES, please cite it as:


Narciso Martin Quijada, David Rodriguez-Lazaro, Jose Maria Eiros, Marta Hernandez (2019). TORMES: an automated pipeline for whole bacterial genome analysis. Bioinformatics, 35(21), 4207–4212, https://doi.org/10.1093/bioinformatics/btz220.


TORMES is a pipeline that relies in many different software and databases that should be cited when using TORMES. The following software and databases were used for this analysis:

Back to index